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Interactive Dendrograms: The R Packages idendro and idendr0

2017, Sieger, Tomáš, Hurley, Catherine B., Fiser, Karel, Beleites, Claudia

Hierarchical cluster analysis is a valuable tool for exploring data by describing their structure using a dendrogram. However, proper visualization and interactive inspection of the dendrogram are needed to unlock the information in the data. We describe a new R package, idendro, that enables the user to inspect dendrograms interactively: to select and color clusters, to zoom and pan the dendrogram, and to visualize the clustered data not only in a built-in heat map, but also in any interactive plot implemented in the cranvas package. A lightweight version idendr0 with reduced dependencies is also available from the Comprehensive R Archive Network.

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A Computational Pipeline for Sepsis Patients’ Stratification and Diagnosis

2018, Campos, David, Pinho, Renato, Neugebauer, Ute, Popp, Juergen, Oliveira, José Luis, Zwiggelaar, Reyer, Gamboa, Hugo, Fred, Ana, Bermúdez i Badia, Sergi

Sepsis is still a little acknowledged public health issue, despite its increasing incidence and the growing mortality rate. In addition, a clear diagnosis can be lengthy and complicated, due to highly variable symptoms and non-specific criteria, causing the disease to be diagnosed and treated too late. This paper presents the HemoSpec platform, a decision support system which, by collecting and automatically processing data from several acquisition devices, can help in the early diagnosis of sepsis.