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- ItemLocal variations of HER2 dimerization in breast cancer cells discovered by correlative fluorescence and liquid electron microscopy(Washington, DC [u.a.] : Assoc., 2015) Peckys, Diana B.; Korf, Ulrike; de Jonge, NielsThe formation of HER2 homodimers plays an important role in breast cancer aggressiveness and progression; however, little is known about its localization. We have studied the intra- and intercellular variation of HER2 at the single-molecule level in intact SKBR3 breast cancer cells. Whole cells were visualized in hydrated state with correlative fluorescence microscopy and environmental scanning electron microscopy (ESEM). The locations of individual HER2 receptors were detected using an anti-HER2 affibody in combination with a quantum dot (QD), a fluorescent nanoparticle. Fluorescence microscopy revealed considerable differences of HER2 membrane expression between individual cells and between different membrane regions of the same cell (that is, membrane ruffles and flat areas). Subsequent ESEM of the corresponding cellular regions provided images of individually labeled HER2 receptors. The high spatial resolution of 3 nm and the close proximity between the QD and the receptor allowed quantifying the stoichiometry of HER2 complexes, distinguishing between monomers, dimers, and higher-order clusters. Downstream data analysis based on calculating the pair correlation function from receptor positions showed that cellular regions exhibiting membrane ruffles contained a substantial fraction of HER2 in homodimeric state. Larger-order clusters were also present. Membrane areas with homogeneous membrane topography, on the contrary, displayed HER2 in random distribution. Second, HER2 homodimers appeared to be absent from a small subpopulation of cells exhibiting a flat membrane topography, possibly resting cells. Local differences in homodimer presence may point toward functional differences with possible relevance for studying metastasis and drug response.
- ItemMid-Pleistocene transition in glacial cycles explained by declining CO2 and regolith removal(Washington, DC [u.a.] : Assoc., 2019) Willeit, M.; Ganopolski, A.; Calov, R.; Brovkin, V.Variations in Earth's orbit pace the glacial-interglacial cycles of the Quaternary, but the mechanisms that transform regional and seasonal variations in solar insolation into glacial-interglacial cycles are still elusive. Here, we present transient simulations of coevolution of climate, ice sheets, and carbon cycle over the past 3 million years. We show that a gradual lowering of atmospheric CO2 and regolith removal are essential to reproduce the evolution of climate variability over the Quaternary. The long-term CO2 decrease leads to the initiation of Northern Hemisphere glaciation and an increase in the amplitude of glacial-interglacial variations, while the combined effect of CO2 decline and regolith removal controls the timing of the transition from a 41,000- to 100,000-year world. Our results suggest that the current CO2 concentration is unprecedented over the past 3 million years and that global temperature never exceeded the preindustrial value by more than 2°C during the Quaternary.
- ItemAgreement between reconstructed and modeled boreal precipitation of the Last Interglacial(Washington, DC [u.a.] : Assoc., 2019) Scussolini, Paolo; Bakker, Pepijn; Guo, Chuncheng; Stepanek, Christian; Zhang, Qiong; Braconnot, Pascale; Cao, Jian; Guarino, Maria-Vittoria; Coumou, Dim; Prange, Matthias; Ward, Philip J.; Renssen, Hans; Kageyama, Masa; Otto-Bliesner, Bette; Aerts, Jeroen C. J. H.The last extended time period when climate may have been warmer than today was during the Last Interglacial (LIG; ca. 129 to 120 thousand years ago). However, a global view of LIG precipitation is lacking. Here, seven new LIG climate models are compared to the first global database of proxies for LIG precipitation. In this way, models are assessed in their ability to capture important hydroclimatic processes during a different climate. The models can reproduce the proxy-based positive precipitation anomalies from the preindustrial period over much of the boreal continents. Over the Southern Hemisphere, proxy-model agreement is partial. In models, LIG boreal monsoons have 42% wider area than in the preindustrial and produce 55% more precipitation and 50% more extreme precipitation. Austral monsoons are weaker. The mechanisms behind these changes are consistent with stronger summer radiative forcing over boreal high latitudes and with the associated higher temperatures during the LIG.
- ItemTime-resolved structural evolution during the collapse of responsive hydrogels: The microgel-to-particle transition(Washington, DC [u.a.] : Assoc., 2018) Keidel, Rico; Ghavami, Ali; Lugo, Dersy M.; Lotze, Gudrun; Virtanen, Otto; Beumers, Peter; Pedersen, Jan Skov; Bardow, Andre; Winkler, Roland G.; Richtering, WalterAdaptive hydrogels, often termed smart materials, are macromolecules whose structure adjusts to external stimuli. Responsive micro- and nanogels are particularly interesting because the small length scale enables very fast response times. Chemical cross-links provide topological constraints and define the three-dimensional structure of the microgels, whereas their porous structure permits fast mass transfer, enabling very rapid structural adaption of the microgel to the environment. The change of microgel structure involves a unique transition from a flexible, swollen finite-size macromolecular network, characterized by a fuzzy surface, to a colloidal particle with homogeneous density and a sharp surface. In this contribution, we determine, for the first time, the structural evolution during the microgel-to-particle transition. Time-resolved small-angle x-ray scattering experiments and computer simulations unambiguously reveal a two-stage process: In a first, very fast process, collapsed clusters form at the periphery, leading to an intermediate, hollowish core-shell structure that slowly transforms to a globule. This structural evolution is independent of the type of stimulus and thus applies to instantaneous transitions as in a temperature jump or to slower stimuli that rely on the uptake of active molecules from and/or exchange with the environment. The fast transitions of size and shape provide unique opportunities for various applications as, for example, in uptake and release, catalysis, or sensing.
- ItemGold-DNA nanosunflowers for efficient gene silencing with controllable transformation(Washington, DC [u.a.] : Assoc., 2019) Huo, Shuaidong; Gong, Ningqiang; Jiang, Ying; Chen, Fei; Guo, Hongbo; Gan, Yaling; Wang, Zhisen; Herrmann, Andreas; Liang, Xing-JieThe development of an efficient delivery system for enhanced and controlled gene interference–based therapeutics is still facing great challenges. Fortunately, the flourishing field of nanotechnology provides more effective strategies for nucleic acid delivery. Here, the triplex-forming oligonucleotide sequence and its complementary strand were used to mediate self-assembly of ultrasmall gold nanoparticles. The obtained sunflower-like nanostructures exhibited strong near-infrared (NIR) absorption and photothermal conversion ability. Upon NIR irradiation, the large-sized nanostructure could disassemble and generate ultrasmall nanoparticles modified with c-myc oncogene silencing sequence, which could directly target the cell nucleus. Moreover, the controlled gene silencing effect could be realized by synergistically controlling the preincubation time with the self-assembled nanostructure (in vitro and in vivo) and NIR irradiation time point. This study provides a new approach for constructing more efficient and tailorable nanocarriers for gene interference applications
- ItemA photonic platform for donor spin qubits in silicon(Washington, DC [u.a.] : Assoc., 2017) Morse, Kevin J.; Abraham, Rohan J. S.; DeAbreu, Adam; Bowness, Camille; Richards, Timothy S.; Riemann, Helge; Abrosimov, Nikolay V.; Becker, Peter; Pohl, Hans-Joachim; Thewalt, Michael L. W.; Simmons, StephanieDonor spins in silicon are highly competitive qubits for upcoming quantum technologies, offering complementary metal-oxide semiconductor compatibility, coherence (T2) times of minutes to hours, and simultaneous initialization, manipulation, and readout fidelities near ~99.9%. This allows for many quantum error correction protocols, which will be essential for scale-up. However, a proven method of reliably coupling spatially separated donor qubits has yet to be identified. We present a scalable silicon-based platform using the unique optical properties of “deep” chalcogen donors. For the prototypical 77Se+ donor, we measure lower bounds on the transition dipole moment and excited-state lifetime, enabling access to the strong coupling limit of cavity quantum electrodynamics using known silicon photonic resonator technology and integrated silicon photonics. We also report relatively strong photon emission from this same transition. These results unlock clear pathways for silicon-based quantum computing, spin-to-photon conversion, photonic memories, integrated single-photon sources, and all-optical switches.
- ItemDissecting spin-phonon equilibration in ferrimagnetic insulators by ultrafast lattice excitation(Washington, DC [u.a.] : Assoc., 2018) Maehrlein, Sebastian F.; Radu, Ilie; Maldonado, Pablo; Paarmann, Alexander; Gensch, Michael; Kalashnikova, Alexandra M.; Pisarev, Roman V.; Wolf, Martin; Oppeneer, Peter M.; Barker, Joseph; Kampfrath, TobiasTo gain control over magnetic order on ultrafast time scales, a fundamental understanding of the way electron spins interact with the surrounding crystal lattice is required. However, measurement and analysis even of basic collective processes such as spin-phonon equilibration have remained challenging. Here, we directly probe the flow of energy and angular momentum in the model insulating ferrimagnet yttrium iron garnet. After ultrafast resonant lattice excitation, we observe that magnetic order reduces on distinct time scales of 1 ps and 100 ns. Temperature-dependent measurements, a spin-coupling analysis, and simulations show that the two dynamics directly reflect two stages of spin-lattice equilibration. On the 1-ps scale, spins and phonons reach quasi-equilibrium in terms of energy through phonon-induced modulation of the exchange interaction. This mechanism leads to identical demagnetization of the ferrimagnet’s two spin sublattices and to a previously inaccessible ferrimagnetic state of increased temperature yet unchanged total magnetization. Finally, on the much slower, 100-ns scale, the excess of spin angular momentum is released to the crystal lattice, resulting in full equilibrium. Our findings are relevant for all insulating ferrimagnets and indicate that spin manipulation by phonons, including the spin Seebeck effect, can be extended to antiferromagnets and into the terahertz frequency range.
- ItemSpatial variations in crop growing seasons pivotal to reproduce global fluctuations in maize and wheat yields(Washington, DC [u.a.] : Assoc., 2018) Jägermeyr, Jonas; Frieler, KatjaTesting our understanding of crop yield responses to weather fluctuations at global scale is notoriously hampered by limited information about underlying management conditions, such as cultivar selection or fertilizer application. Here, we demonstrate that accounting for observed spatial variations in growing seasons increases the variance in reported national maize and wheat yield anomalies that can be explained by process-based model simulations from 34 to 58% and 47 to 54% across the 10 most weather-sensitive main producers, respectively. For maize, the increase in explanatory power is similar to the increase achieved by accounting for water stress, as compared to simulations assuming perfect water supply in both rainfed and irrigated agriculture. Representing water availability constraints in irrigation is of second-order importance. We improve the model’s explanatory power by better representing crops’ exposure to observed weather conditions, without modifying the weather response itself. This growing season adjustment now allows for a close reproduction of heat wave and drought impacts on crop yields.
- ItemMolecular orbital imprint in laser-driven electron recollision(Washington, DC [u.a.] : Assoc., 2018) Schell, Felix; Bredtmann, Timm; Schulz, Claus Peter; Patchkovskii, Serguei; Vrakking, Marc J. J.; Mikosch, JochenElectrons released by strong-field ionization from atoms and molecules or in solids can be accelerated in the oscillating laser field and driven back to their ion core. The ensuing interaction, phase-locked to the optical cycle, initiates the central processes underlying attosecond science. A common assumption assigns a single, welldefined return direction to the recolliding electron. We study laser-induced electron rescattering associated with two different ionization continua in the same, spatially aligned, polyatomic molecule. We show by experiment and theory that the electron return probability is molecular frame-dependent and carries structural information on the ionized orbital. The returning wave packet structure has to be accounted for in analyzing strong-field spectroscopy experiments that critically depend on the interaction of the laser-driven continuum electron, such as laser-induced electron diffraction.
- ItemMolecular structure of bottlebrush polymers in melts(Washington, DC [u.a.] : Assoc., 2016) Paturej, Jarosław; Sheiko, Sergei S.; Panyukov, Sergey; Rubinstein, MichaelBottlebrushes are fascinating macromolecules that display an intriguing combination of molecular and particulate features having vital implications in both living and synthetic systems, such as cartilage and ultrasoft elastomers. However, the progress in practical applications is impeded by the lack of knowledge about the hierarchic organization of both individual bottlebrushes and their assemblies. We delineate fundamental correlations between molecular architecture, mesoscopic conformation, and macroscopic properties of polymer melts. Numerical simulations corroborate theoretical predictions for the effect of grafting density and side-chain length on the dimensions and rigidity of bottlebrushes, which effectively behave as a melt of flexible filaments. These findings provide quantitative guidelines for the design of novel materials that allow architectural tuning of their properties in a broad range without changing chemical composition.
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