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search.filters.applied.f.access: openAccess × Has files: Yes × Subject: Clustering × Subject: Konferenzschrift ×

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    Challenges of Applying Knowledge Graph and their Embeddings to a Real-world Use-case
    (Aachen, Germany : RWTH Aachen, 2021) Petzold, Rick; Gesese, Genet Asefa; Bogdanova, Viktoria; Zylowski, Thorsten; Sack, Harald; Alam, Mehwish; Alam, Mehwish; Buscaldi, Davide; Cochez, Michael; Osborne, Francesco; Reforgiato Recupero, Diego; Sack, Harald
    Different Knowledge Graph Embedding (KGE) models have been proposed so far which are trained on some specific KG completion tasks such as link prediction and evaluated on datasets which are mainly created for such purpose. Mostly, the embeddings learnt on link prediction tasks are not applied for downstream tasks in real-world use-cases such as data available in different companies/organizations. In this paper, the challenges with enriching a KG which is generated from a real-world relational database (RDB) about companies, with information from external sources such as Wikidata and learning representations for the KG are presented. Moreover, a comparative analysis is presented between the KGEs and various text embeddings on some downstream clustering tasks. The results of experiments indicate that in use-cases like the one used in this paper, where the KG is highly skewed, it is beneficial to use text embeddings or language models instead of KGEs.
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    Easy Semantification of Bioassays
    (Heidelberg : Springer, 2022) Anteghini, Marco; D’Souza, Jennifer; dos Santos, Vitor A. P. Martins; Auer, Sören
    Biological data and knowledge bases increasingly rely on Semantic Web technologies and the use of knowledge graphs for data integration, retrieval and federated queries. We propose a solution for automatically semantifying biological assays. Our solution contrasts the problem of automated semantification as labeling versus clustering where the two methods are on opposite ends of the method complexity spectrum. Characteristically modeling our problem, we find the clustering solution significantly outperforms a deep neural network state-of-the-art labeling approach. This novel contribution is based on two factors: 1) a learning objective closely modeled after the data outperforms an alternative approach with sophisticated semantic modeling; 2) automatically semantifying biological assays achieves a high performance F1 of nearly 83%, which to our knowledge is the first reported standardized evaluation of the task offering a strong benchmark model.