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- ItemHigh-fidelity multimode fibre-based endoscopy for deep brain in vivo imaging(London : Nature Publishing Group, 2018) Turtaev, Sergey; Leite, Ivo T.; Altwegg-Boussac, Tristan; Pakan, Janelle M. P.; Rochefort, Nathalie L.; Čižmár, TomášProgress in neuroscience relies on new techniques for investigating the complex dynamics of neuronal networks. An ongoing challenge is to achieve minimally invasive and high-resolution observations of neuronal activity in vivo inside deep brain areas. Recently introduced methods for holographic control of light propagation in complex media enable the use of a hair-thin multimode optical fibre as an ultranarrow imaging tool. Compared to endoscopes based on graded-index lenses or fibre bundles, this new approach offers a footprint reduction exceeding an order of magnitude, combined with a significant enhancement in resolution. We designed a compact and high-speed system for fluorescent imaging at the tip of a fibre, achieving a resolution of 1.18 ± 0.04 µm across a 50-µm field of view, yielding 7-kilopixel images at a rate of 3.5 frames/s. Furthermore, we demonstrate in vivo observations of cell bodies and processes of inhibitory neurons within deep layers of the visual cortex and hippocampus of anaesthetised mice. This study paves the way for modern microscopy to be applied deep inside tissues of living animal models while exerting a minimal impact on their structural and functional properties.
- ItemSide-view holographic endomicroscopy via a custom-terminated multimode fibre(Washington, DC : Soc., 2021) Silveira, Beatriz M.; Pikálek, Tomáš; Stibůrek, Miroslav; Ondráčková, Petra; Jákl, Petr; Leite, Ivo T.; Čižmár, TomášMicroendoscopes based on optical fibres have recently come to the fore as promising candidates allowing in-vivo observations of otherwise inaccessible biological structures in animal models. Despite being still in its infancy, imaging can now be performed at the tip of a single multimode fibre, by relying on powerful holographic methods for light control. Fibre based endoscopy is commonly performed en face, resulting in possible damage of the specimen owing to the direct contact between the distal end of the probe and target. On this ground, we designed an all-fibre probe with an engineered termination that reduces compression and damage to the tissue under investigation upon probe insertion. The geometry of the termination brings the field of view to a plane parallel to the fibre’s longitudinal direction, conveying the probe with off-axis imaging capabilities. We show that its focusing ability also benefits from a higher numerical aperture, resulting in imaging with increased spatial resolution. The effect of probe insertion was investigated inside a tissue phantom comprising fluorescent particles suspended in agarose gel, and a comparison was established between the novel side-view probe and the standard en face fibre probe. This new concept paves the way to significantly less invasive deep-tissue imaging.
- ItemTime-averaged image projection through a multimode fiber(Washington, DC : Soc., 2021) Boonzajer Flaes, Dirk; Štolzová, Hana; Čižmár, TomášMany disciplines, ranging from lithography to opto-genetics, require high-fidelity image projection. However, not all optical systems can display all types of images with equal ease. Therefore, the image projection quality is dependent on the type of image. In some circumstances, this can lead to a catastrophic loss of intensity or image quality. For complex optical systems, it may not be known in advance which types of images pose a problem. Here we show a new method called Time-Averaged image Projection (TAP), allowing us to mitigate these limitations by taking the entire image projection system into account despite its complexity and building the desired intensity distribution up from multiple illumination patterns. Using a complex optical setup, consisting of a wavefront shaper and a multimode optical fiber illuminated by coherent light, we succeeded to suppress any speckle-related background. Further, we can display independent images at multiple distances simultaneously, and alter the effective sharpness depth through the algorithm. Our results demonstrate that TAP can significantly enhance the image projection quality in multiple ways. We anticipate that our results will greatly complement any application in which the response to light irradiation is relatively slow (one microsecond with current technology) and where high-fidelity spatial distribution of optical power is required.
- ItemCompressively sampling the optical transmission matrix of a multimode fibre(London : Nature Publishing Group, 2021) Li, Shuhui; Saunders, Charles; Lum, Daniel J.; Murray-Bruce, John; Goyal, Vivek K.; Čižmár, Tomáš; Phillips, David B.The measurement of the optical transmission matrix (TM) of an opaque material is an advanced form of space-variant aberration correction. Beyond imaging, TM-based methods are emerging in a range of fields, including optical communications, micro-manipulation, and computing. In many cases, the TM is very sensitive to perturbations in the configuration of the scattering medium it represents. Therefore, applications often require an up-to-the-minute characterisation of the fragile TM, typically entailing hundreds to thousands of probe measurements. Here, we explore how these measurement requirements can be relaxed using the framework of compressive sensing, in which the incorporation of prior information enables accurate estimation from fewer measurements than the dimensionality of the TM we aim to reconstruct. Examples of such priors include knowledge of a memory effect linking the input and output fields, an approximate model of the optical system, or a recent but degraded TM measurement. We demonstrate this concept by reconstructing the full-size TM of a multimode fibre supporting 754 modes at compression ratios down to ∼5% with good fidelity. We show that in this case, imaging is still possible using TMs reconstructed at compression ratios down to ∼1% (eight probe measurements). This compressive TM sampling strategy is quite general and may be applied to a variety of other scattering samples, including diffusers, thin layers of tissue, fibre optics of any refractive profile, and reflections from opaque walls. These approaches offer a route towards the measurement of high-dimensional TMs either quickly or with access to limited numbers of measurements.
- ItemMemory effect assisted imaging through multimode optical fibres([London] : Nature Publishing Group UK, 2021) Li, Shuhui; Horsley, Simon A.R.; Tyc, Tomáš; Čižmár, Tomáš; Phillips, David B.When light propagates through opaque material, the spatial information it holds becomes scrambled, but not necessarily lost. Two classes of techniques have emerged to recover this information: methods relying on optical memory effects, and transmission matrix (TM) approaches. Here we develop a general framework describing the nature of memory effects in structures of arbitrary geometry. We show how this framework, when combined with wavefront shaping driven by feedback from a guide-star, enables estimation of the TM of any such system. This highlights that guide-star assisted imaging is possible regardless of the type of memory effect a scatterer exhibits. We apply this concept to multimode fibres (MMFs) and identify a ‘quasi-radial’ memory effect. This allows the TM of an MMF to be approximated from only one end - an important step for micro-endoscopy. Our work broadens the applications of memory effects to a range of novel imaging and optical communication scenarios.
- ItemObserving distant objects with a multimode fiber-based holographic endoscope(Melville, NY : AIP Publishing, 2021) Leite, Ivo T.; Turtaev, Sergey; Boonzajer Flaes, Dirk E.; Čižmár, TomášHolographic wavefront manipulation enables converting hair-thin multimode optical fibers into minimally invasive lensless imaging instruments conveying much higher information densities than conventional endoscopes. Their most prominent applications focus on accessing delicate environments, including deep brain compartments, and recording micrometer-scale resolution images of structures in close proximity to the distal end of the instrument. Here, we introduce an alternative "far-field"endoscope capable of imaging macroscopic objects across a large depth of field. The endoscope shaft with dimensions of 0.2 × 0.4 mm2 consists of two parallel optical fibers: one for illumination and the other for signal collection. The system is optimized for speed, power efficiency, and signal quality, taking into account specific features of light transport through step-index multimode fibers. The characteristics of imaging quality are studied at distances between 20 mm and 400 mm. As a proof-of-concept, we provide imaging inside the cavities of a sweet pepper commonly used as a phantom for biomedically relevant conditions. Furthermore, we test the performance on a functioning mechanical clock, thus verifying its applicability in dynamically changing environments. With the performance reaching the standard definition of video endoscopes, this work paves the way toward the exploitation of minimally invasive holographic micro-endoscopes in clinical and diagnostics applications. © 2021 Author(s).
- ItemPolarization-resolved second-harmonic generation imaging through a multimode fiber(Washington, DC : OSA, 2021) Cifuentes, Angel; Pikálek, Tomáš; Ondráčková, Petra; Amezcua-Correa, Rodrigo; Antonio-Lopez, José Enrique; Čižmár, Tomáš; Trägårdh, JohannaMultimode fiber-based endoscopes have recently emerged as a tool for minimally invasive endoscopy in tissue, at depths well beyond the reach of multiphoton imaging. Here, we demonstrate label-free second-harmonic generation (SHG) microscopy through such a fiber endoscope. We simultaneously fully control the excitation polarization state and the spatial distribution of the light at the fiber tip, and we use this to implement polarization-resolved SHG imaging, which allows imaging and identification of structural proteins such as collagen and myosin. We image mouse tail tendon and heart tissue, employing the endoscope at depths up to 1 mm, demonstrating that we can differentiate these structural proteins. This method has the potential for enabling instant and in situ diagnosis of tumors and fibrotic conditions in sensitive tissue with minimal damage.
- ItemRobustness of Light-Transport Processes to Bending Deformations in Graded-Index Multimode Waveguides(College Park, Md. : APS, 2018) Boonzajer Flaes, Dirk E.; Stopka, Jan; Turtaev, Sergey; de Boer, Johannes F.; Tyc, Tomáš; Čižmár, TomášLight transport through a multimode optical waveguide undergoes changes when subjected to bending deformations. We show that optical waveguides with a perfectly parabolic refractive index profile are almost immune to bending, conserving the structure of propagation-invariant modes. Moreover, we show that changes to the transmission matrix of parabolic-index fibers due to bending can be expressed with only two free parameters, regardless of how complex a particular deformation is. We provide detailed analysis of experimentally measured transmission matrices of a commercially available graded-index fiber as well as a gradient-index rod lens featuring a very faithful parabolic refractive index profile. Although parabolic-index fibers with a sufficiently precise refractive index profile are not within our reach, we show that imaging performance with standard commercially available graded-index fibers is significantly less influenced by bending deformations than step-index types under the same conditions. Our work thus predicts that the availability of ultraprecise parabolic-index fibers will make endoscopic applications with flexible probes feasible and free from extremely elaborate computational challenges.