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- ItemCurvature model for nanoparticle size effects on peptide fibril stability and molecular dynamics simulation data(Amsterdam [u.a.] : Elsevier, 2022) John, Torsten; Martin, Lisandra L.; Risselada, Herre Jelger; Abel, BerndNanostructured surfaces are widespread in nature and are being further developed in materials science. This makes them highly relevant for biomolecules, such as peptides. In this data article, we present a curvature model and molecular dynamics (MD) simulation data on the influence of nanoparticle size on the stability of amyloid peptide fibrils related to our research article entitled “Mechanistic insights into the size-dependent effects of nanoparticles on inhibiting and accelerating amyloid fibril formation” (John et al., 2022) [1]. We provide the code to perform MD simulations in GROMACS 4.5.7 software of arbitrarily chosen biomolecule oligomers adsorbed on a curved surface of chosen nanoparticle size. We also provide the simulation parameters and data for peptide oligomers of Aß40, NNFGAIL, GNNQQNY, and VQIYVK. The data provided allows researchers to further analyze our MD simulations and the curvature model allows for a better understanding of oligomeric structures on surfaces.
- ItemGreen-Emissive Zn2+ Complex Supported by a Macrocyclic Schiff-Base/Calix[4]arene-Ligand: Crystallographic and Spectroscopic Characterization(Weinheim : Wiley-VCH, 2021) Ullmann, Steve; Börner, Martin; Kahnt, Axel; Abel, Bernd; Kersting, BertholdThe macrocyclic calix[4]arene ligand H2L comprises two non-fluorescent 2,6-bis-(iminomethyl)phenolate chromophores, which show a chelation-enhanced fluorescence enhancement upon Zn2+ ion complexation. Macrocyclic [ZnL] complexes aggregate in the absence of external coligands via intermolecular Zn−N bonds to give dimeric [ZnL]2 structures comprising two five-coordinated Zn2+ ions. The absorption and emission wavelengths are bathochromically shifted upon going from the liquid (λmax,abs (CH2Cl2)=404 nm, λmax,em (CH2Cl2)=484 nm) to the solid state (λmax,abs=424 nm (4 wt%, BaSO4 pellet), λmax,em=524 nm (neat solid)). Insights into the electronic nature of the UV-vis transitions were obtained with time-dependent density functional theory (TD-DFT) calculations for a truncated model complex.