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- ItemMagnesium Contact Ions Stabilize the Tertiary Structure of Transfer RNA: Electrostatics Mapped by Two-Dimensional Infrared Spectra and Theoretical Simulations(Washington, DC : Soc., 2021) Schauss, Jakob; Kundu, Achintya; Fingerhut, Benjamin P.; Elsaesser, ThomasIons interacting with hydrated RNA play a central role in defining its secondary and tertiary structure. While spatial arrangements of ions, water molecules, and phosphate groups have been inferred from X-ray studies, the role of electrostatic and other noncovalent interactions in stabilizing compact folded RNA structures is not fully understood at the molecular level. Here, we demonstrate that contact ion pairs of magnesium (Mg2+) and phosphate groups embedded in local water shells stabilize the tertiary equilibrium structure of transfer RNA (tRNA). Employing dialyzed tRNAPhe from yeast and tRNA from Escherichia coli, we follow the population of Mg2+ sites close to phosphate groups of the ribose-phosphodiester backbone step by step, combining linear and nonlinear infrared spectroscopy of phosphate vibrations with molecular dynamics simulations and ab initio vibrational frequency calculations. The formation of up to six Mg2+/phosphate contact pairs per tRNA and local field-induced reorientations of water molecules balance the phosphate-phosphate repulsion in nonhelical parts of tRNA, thus stabilizing the folded structure electrostatically. Such geometries display limited sub-picosecond fluctuations in the arrangement of water molecules and ion residence times longer than 1 µs. At higher Mg2+ excess, the number of contact ion pairs per tRNA saturates around 6 and weakly interacting ions prevail. Our results suggest a predominance of contact ion pairs over long-range coupling of the ion atmosphere and the biomolecule in defining and stabilizing the tertiary structure of tRNA. © 2020 American Chemical Society.
- ItemPhosphate Vibrations Probe Electric Fields in Hydrated Biomolecules: Spectroscopy, Dynamics, and Interactions(Washington, DC : Soc., 2021) Elsaesser, Thomas; Schauss, Jakob; Kundu, Achintya; Fingerhut, Benjamin P.Electric interactions have a strong impact on the structure and dynamics of biomolecules in their native water environment. Given the variety of water arrangements in hydration shells and the femto- to subnanosecond time range of structural fluctuations, there is a strong quest for sensitive noninvasive probes of local electric fields. The stretching vibrations of phosphate groups, in particular the asymmetric (PO2)− stretching vibration νAS(PO2)−, allow for a quantitative mapping of dynamic electric fields in aqueous environments via a field-induced redshift of their transition frequencies and concomitant changes of vibrational line shapes. We present a systematic study of νAS(PO2)− excitations in molecular systems of increasing complexity, including dimethyl phosphate (DMP), short DNA and RNA duplex structures, and transfer RNA (tRNA) in water. A combination of linear infrared absorption, two-dimensional infrared (2D-IR) spectroscopy, and molecular dynamics (MD) simulations gives quantitative insight in electric-field tuning rates of vibrational frequencies, electric field and fluctuation amplitudes, and molecular interaction geometries. Beyond neat water environments, the formation of contact ion pairs of phosphate groups with Mg2+ ions is demonstrated via frequency upshifts of the νAS(PO2)− vibration, resulting in a distinct vibrational band. The frequency positions of contact geometries are determined by an interplay of attractive electric and repulsive exchange interactions.
- ItemGeneration of millijoule few-cycle pulses at 5 μm by indirect spectral shaping of the idler in an optical parametric chirped pulse amplifier(Washington, DC : Soc., 2018) Bock, Martin; Grafenstein, Lorenz von; Griebner, Uwe; Elsaesser, ThomasSpectral pulse shaping in a high-intensity midwave-infrared (MWIR) optical parametric chirped pulse amplifier (OPCPA) operating at 1 kHz repetition rate is reported. We successfully apply a MWIR spatial light modulator (SLM) for the generation of ultrashort idler pulses at 5 μm wavelength. Only bulk optics and active phase control of the 3.5 μm signal pulses via the SLM are employed for generating compressed idler pulses with a duration of 80 fs. The 80-fs pulse duration corresponds to less than five optical cycles at the central wavelength of 5.0 μm. The pulse energy amounts to 1.0 mJ, which translates into a peak power of 10 GW. The generated pulse parameters represent record values for high-intensity MWIR OPCPAs.
- ItemMulti-millijoule, few-cycle 5 µm OPCPA at 1 kHz repetition rate(Washington, DC : Soc., 2020) von Grafenstein, Lorenz; Bock, Martin; Ueberschaer, Dennis; Escoto, Esmerando; Koç, Azize; Zawilski, Kevin; Schunemann, Peter; Griebner, Uwe; Elsaesser, ThomasA table-top midwave-infrared optical parametric chirped pulse amplification (OPCPA) system generates few-cycle pulses with multi-10 GW peak power at a 1 kHz repetition rate. The all-optically synchronized system utilizes ZnGeP2 nonlinear crystals and a highly stable 2 µm picosecond pump laser based on Ho:YLiF4. An excellent energy extraction is achieved by reusing the pump pulse after the third parametric power amplification stage, resulting in 3.4 mJ idler pulses at a center wavelength of 4.9 µm. Pulses as short as 89.4 fs are achieved, close to only five optical cycles. Taking into account the pulse energy, a record high peak power of 33 GW for high-energy mid-IR OPCPAs beyond 4 µm wavelength is demonstrated. © 2020 OSA - The Optical Society. All rights reserved.
- ItemSpatial distribution of electric-field enhancement across the gap of terahertz bow-tie antennas(Washington, DC : Soc., 2020) Runge, Matthias; Engel, Dieter; Schneider, Michael; Reimann, Klaus; Woerner, Michael; Elsaesser, ThomasThe electric-field enhancement in terahertz (THz) antennas designed for nonlinear THz spectroscopy of soft matter is characterized by spatially resolved electrooptic sampling. To mimic the relevant interaction geometry, metallic, resonant bow-tie antennas are deposited on a thin zinc telluride crystal of 10 µm thickness. The THz electric field transmitted through the antenna gap is recorded by electrooptic sampling. By focusing the 800 nm, sub-20 fs sampling pulses, we achieve a spatial resolution of some 3 µm, which is 1/3 to 1/8 of the antenna-gap width. The THz field in the gap displays an enhancement by a factor of up to 4.5 with a pronounced spectral variation, depending sensitively on the antenna-arm length and the gap width. By scanning the 800 nm probe spot laterally through the antenna gap, the spatial variation of the enhancement is determined, reaching the highest values at the edges of the gap. The results are in agreement with simulations of the electric-field distributions by finite-element calculations. © 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement