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Author: Galarce Marín, Felipe × Version: publishedVersion ×

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    State estimation with model reduction and shape variability: Application to biomedical problems
    (Berlin : Weierstraß-Institut für Angewandte Analysis und Stochastik, 2021) Galarce Marín, Felipe; Lombardi, Damiano; Mula, Olga
    We develop a mathematical and numerical framework to solve state estimation problems for applications that present variations in the shape of the spatial domain. This situation arises typically in a biomedical context where inverse problems are posed on certain organs or portions of the body which inevitably involve morphological variations. If one wants to provide fast reconstruction methods, the algorithms must take into account the geometric variability. We develop and analyze a method which allows to take this variability into account without needing any a priori knowledge on a parametrization of the geometrical variations. For this, we rely on morphometric techniques involving Multidimensional Scaling, and couple them with reconstruction algorithms that make use of reduced model spaces pre-computed on a database of geometries. We prove the potential of the method on a synthetic test problem inspired from the reconstruction of blood flows and quantities of medical interest with Doppler ultrasound imaging.
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    Displacement and pressure reconstruction from magnetic resonance elastography images: Application to an in silico brain model
    (Berlin : Weierstraß-Institut für Angewandte Analysis und Stochastik, 2022) Galarce Marín, Felipe; Tabelow, Karsten; Polzehl, Jörg; Papanikas, Christos Panagiotis; Vavourakis, Vasileios; Lilaj, Ledia; Sack, Ingolf; Caiazzo, Alfonso
    This paper investigates a data assimilation approach for non-invasive quantification of intracranial pressure from partial displacement data, acquired through magnetic resonance elastography. Data assimilation is based on a parametrized-background data weak methodology, in which the state of the physical system tissue displacements and pressure fields is reconstructed from partially available data assuming an underlying poroelastic biomechanics model. For this purpose, a physics-informed manifold is built by sampling the space of parameters describing the tissue model close to their physiological ranges, to simulate the corresponding poroelastic problem, and compute a reduced basis. Displacements and pressure reconstruction is sought in a reduced space after solving a minimization problem that encompasses both the structure of the reduced-order model and the available measurements. The proposed pipeline is validated using synthetic data obtained after simulating the poroelastic mechanics on a physiological brain. The numerical experiments demonstrate that the framework can exhibit accurate joint reconstructions of both displacement and pressure fields. The methodology can be formulated for an arbitrary resolution of available displacement data from pertinent images. It can also inherently handle uncertainty on the physical parameters of the mechanical model by enlarging the physics-informed manifold accordingly. Moreover, the framework can be used to characterize, in silico, biomarkers for pathological conditions, by appropriately training the reduced-order model. A first application for the estimation of ventricular pressure as an indicator of abnormal intracranial pressure is shown in this contribution.