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    Reproducible research through persistently linked and visualized data
    (Berlin : Weierstraß-Institut für Angewandte Analysis und Stochastik, 2017) Drees, Bastian; Kraft, Angelina; Koprucki, Thomas
    The demand of reproducible results in the numerical simulation of opto-electronic devices or more general in mathematical modeling and simulation requires the (long-term) accessibility of data and software that were used to generate those results. Moreover, to present those results in a comprehensible manner data visualizations such as videos are useful. Persistent identifier can be used to ensure the permanent connection of these different digital objects thereby preserving all information in the right context. Here we give an overview over the state-of-the art of data preservation, data and software citation and illustrate the benefits and opportunities of enhancing publications with visual simulation data by showing a use case from opto-electronics.
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    Mathematical models: A research data category?
    (Berlin : Weierstraß-Institut für Angewandte Analysis und Stochastik, 2016) Koprucki, Thomas; Tabelow, Karsten
    Mathematical modeling and simulation (MMS) has now been established as an essential part of the scientific work in many disciplines and application areas. It is common to categorize the involved numerical data and to some extend the corresponding scientific software as research data. Both have their origin in mathematical models. In this contribution we propose a holistic approach to research data in MMS by including the mathematical models and discuss the initial requirements for a conceptual data model for this field.
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    Mathematical models as research data via flexiformal theory graphs
    (Berlin : Weierstraß-Institut für Angewandte Analysis und Stochastik, 2017) Kohlhase, Michael; Koprucki, Thomas; Müller, Dennis; Tabelow, Karsten
    Mathematical modeling and simulation (MMS) has now been established as an essential part of the scientific work in many disciplines. It is common to categorize the involved numerical data and to some extent the corresponding scientific software as research data. But both have their origin in mathematical models, therefore any holistic approach to research data in MMS should cover all three aspects: data, software, and models. While the problems of classifying, archiving and making accessible are largely solved for data and first frameworks and systems are emerging for software, the question of how to deal with mathematical models is completely open. In this paper we propose a solution to cover all aspects of mathematical models: the underlying mathematical knowledge, the equations, boundary conditions, numeric approximations, and documents in a flexiformal framework, which has enough structure to support the various uses of models in scientific and technology workflows. Concretely we propose to use the OMDoc/MMT framework to formalize mathematical models and show the adequacy of this approach by modeling a simple, but non-trivial model: van Roosbroecks drift-diffusion model for one-dimensional devices. This formalization and future extensions allows us to support the modeler by e.g. flexibly composing models, visualizing Model Pathway Diagrams, and annotating model equations in documents as induced from the formalized documents by flattening. This directly solves some of the problems in treating MMS as research data and opens the way towards more MKM services for models.