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- ItemVibrational Spectroscopic Investigation of Blood Plasma and Serum by Drop Coating Deposition for Clinical Application(Basel : Molecular Diversity Preservation International (MDPI), 2021) Huang, Jing; Ali, Nairveen; Quansah, Elsie; Guo, Shuxia; Noutsias, Michel; Meyer-Zedler, Tobias; Bocklitz, Thomas; Popp, Jürgen; Neugebauer, Ute; Ramoji, AnuradhaIn recent decades, vibrational spectroscopic methods such as Raman and FT-IR spectroscopy are widely applied to investigate plasma and serum samples. These methods are combined with drop coating deposition techniques to pre-concentrate the biomolecules in the dried droplet to improve the detected vibrational signal. However, most often encountered challenge is the inhomogeneous redistribution of biomolecules due to the coffee-ring effect. In this study, the variation in biomolecule distribution within the dried-sample droplet has been investigated using Raman and FT-IR spectroscopy and fluorescence lifetime imaging method. The plasma-sample from healthy donors were investigated to show the spectral differences between the inner and outer-ring region of the dried-sample droplet. Further, the preferred location of deposition of the most abundant protein albumin in the blood during the drying process of the plasma has been illustrated by using deuterated albumin. Subsequently, two patients with different cardiac-related diseases were investigated exemplarily to illustrate the variation in the pattern of plasma and serum biomolecule distribution during the drying process and its impact on patient-stratification. The study shows that a uniform sampling position of the droplet, both at the inner and the outer ring, is necessary for thorough clinical characterization of the patient’s plasma and serum sample using vibrational spectroscopy.
- Item3-Step flow focusing enables multidirectional imaging of bioparticles for imaging flow cytometry(Cambridge : RSC, 2020) Kleiber, Andreas; Ramoji, Anuradha; Mayer, Günter; Neugebauer, Ute; Popp, Jürgen; Henkel, ThomasMultidirectional imaging flow cytometry (mIFC) extends conventional imaging flow cytometry (IFC) for the image-based measurement of 3D-geometrical features of particles. The innovative core is a flow rotation unit in which a vertical sample lamella is incrementally rotated by 90 degrees into a horizontal lamella. The required multidirectional views are generated by guiding all particles at a controllable shear flow position of the parabolic velocity profile of the capillary slit detection chamber. All particles pass the detection chamber in a two-dimensional sheet under controlled rotation while each particle is imaged multiple times. This generates new options for automated particle analysis. In an experimental application, we used our system for the accurate classification of 15 species of pollen based on 3D-morphological information. We demonstrate how the combination of multi directional imaging with advanced machine learning algorithms can improve the accuracy of automated bio-particle classification. As an additional benefit, we significantly decrease the number of false positives in the classification of foreign particles,i.e.those elements which do not belong to one of the trained classes by the 3D-extension of the classification algorithm. © The Royal Society of Chemistry 2020.
- ItemAssessment of Advanced Oxidation Processes Using Zebrafish in a Non-Forced Exposure System: A Proof of Concept(Basel : MDPI, 2021) Cabascango, Tamia; Ortiz, Karol; Sandoval Pauker, Christian; Espinoza Pavón, Isabel; Ramoji, Anuradha; Popp, Jürgen; Pérez, Jady; Pinto, C. Miguel; Rivera-Parra, José Luis; Muñoz-Bisesti, Florinella; Aldás, María Belén; Araújo, Cristiano V. M.; Vargas Jentzsch, PaulWater bodies and aquatic ecosystems are threatened by discharges of industrial waters. Ecotoxicological effects of components occurring in untreated and treated wastewaters are often not considered. The use of a linear, multi-compartmented, non-forced, static system constructed with PET bottles is proposed for the quality assessment of treated waters, to deal with such limitations. Two synthetic waters, one simulating wastewater from the textile industry and the other one simulating wastewater from the cassava starch industry, were prepared and treated by homogeneous Fenton process and heterogeneous photocatalysis, respectively. Untreated and treated synthetic waters and their dilutions were placed into compartments of the non-forced exposure system, in which zebrafish (Danio rerio), the indicator organism, could select the environment of its preference. Basic physical–chemical and chemical parameters of untreated and treated synthetic waters were measured. The preference and avoidance responses allowed verification of whether or not the quality of the water was improved due to the treatment. The results of these assays can be a complement to conventional parameters of water quality.