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- ItemNoise-Aided Logic in an Electronic Analog of Synthetic Genetic Networks(San Francisco, CA : Public Library of Science (PLoS), 2013) Hellen, E.H.; Dana, S.K.; Kurths, J.; Kehler, E.; Sinha, S.We report the experimental verification of noise-enhanced logic behaviour in an electronic analog of a synthetic genetic network, composed of two repressors and two constitutive promoters. We observe good agreement between circuit measurements and numerical prediction, with the circuit allowing for robust logic operations in an optimal window of noise. Namely, the input-output characteristics of a logic gate is reproduced faithfully under moderate noise, which is a manifestation of the phenomenon known as Logical Stochastic Resonance. The two dynamical variables in the system yield complementary logic behaviour simultaneously. The system is easily morphed from AND/NAND to OR/NOR logic.
- ItemProbing the Statistical Properties of Unknown Texts: Application to the Voynich Manuscript(San Francisco, CA : Public Library of Science (PLoS), 2013) Amancio, D.R.; Altmann, E.G.; Rybski, D.; Oliveira Jr., O.N.; da Costa, L.F.While the use of statistical physics methods to analyze large corpora has been useful to unveil many patterns in texts, no comprehensive investigation has been performed on the interdependence between syntactic and semantic factors. In this study we propose a framework for determining whether a text (e.g., written in an unknown alphabet) is compatible with a natural language and to which language it could belong. The approach is based on three types of statistical measurements, i.e. obtained from first-order statistics of word properties in a text, from the topology of complex networks representing texts, and from intermittency concepts where text is treated as a time series. Comparative experiments were performed with the New Testament in 15 different languages and with distinct books in English and Portuguese in order to quantify the dependency of the different measurements on the language and on the story being told in the book. The metrics found to be informative in distinguishing real texts from their shuffled versions include assortativity, degree and selectivity of words. As an illustration, we analyze an undeciphered medieval manuscript known as the Voynich Manuscript. We show that it is mostly compatible with natural languages and incompatible with random texts. We also obtain candidates for keywords of the Voynich Manuscript which could be helpful in the effort of deciphering it. Because we were able to identify statistical measurements that are more dependent on the syntax than on the semantics, the framework may also serve for text analysis in language-dependent applications.
- ItemChange in the embedding dimension as an indicator of an approaching transition(San Francisco, CA : Public Library of Science (PLoS), 2014) Neuman, Y.; Marwan, N.; Cohen, Y.Predicting a transition point in behavioral data should take into account the complexity of the signal being influenced by contextual factors. In this paper, we propose to analyze changes in the embedding dimension as contextual information indicating a proceeding transitive point, called OPtimal Embedding tRANsition Detection (OPERAND). Three texts were processed and translated to time-series of emotional polarity. It was found that changes in the embedding dimension proceeded transition points in the data. These preliminary results encourage further research into changes in the embedding dimension as generic markers of an approaching transition point.
- ItemDiminished heart beat non-stationarities in congestive heart failure(Lausanne : Frontiers Media, 2013) Camargo, Sabrina; Riedl, Maik; Anteneodo, Celia; Kurths, Jürgen; Wessel, NielsStudies on heart rate variability (HRV) have become popular and the possibility of diagnosis based on non-invasive techniques compels us to overcome the difficulties originated on the environmental changes that can affect the signal. We perform a non-parametric segmentation which consists of locating the points where the signal can be split into stationary segments. By finding stationary segments we are able to analyze the size of these segments and evaluate how the signal changes from one segment to another, looking at the statistical moments given in each patch, for example, mean and variance. We analyze HRV data for 15 patients with congestive heart failure (CHF; 11 males, 4 females, age 56±11 years), 18 elderly healthy subjects (EH; 11 males, 7 females, age 50±7 years), and 15 young healthy subjects (YH; 11 females, 4 males, age 31±6 years). Our results confirm higher variance for YH, and EH, while CHF displays diminished variance with p-values <0.01, when compared to the healthy groups, presenting higher HRV in healthy subjects. Moreover, it is possible to distinguish between YH and EH with p < 0.05 through the segmentation outcomes. We found high correlations between the results of segmentation and standard measures of HRV analysis and a connection to results of detrended fluctuation analysis (DFA). The segmentation applied to HRV studies detects aging and pathological conditions effects on the non-stationary behavior of the analyzed groups, promising to contribute in complexity analysis and providing risk stratification measures.
- ItemGeneral scaling of maximum degree of synchronization in noisy complex networks(Bristol : Institute of Physics Publishing, 2014) Traxl, D.; Boers, N.; Kurths, J.The effects of white noise and global coupling strength on the maximum degree of synchronization in complex networks are explored. We perform numerical simulations of generic oscillator models with both linear and non-linear coupling functions on a broad spectrum of network topologies. The oscillator models include the Fitzhugh-Nagumo model, the Izhikevich model and the Kuramoto phase oscillator model. The network topologies range from regular, random and highly modular networks to scale-free and small-world networks, with both directed and undirected edges. We then study the dependency of the maximum degree of synchronization on the global coupling strength and the noise intensity. We find a general scaling of the synchronizability, and quantify its validity by fitting a regression model to the numerical data.
- ItemDetours around basin stability in power networks(Bristol : Institute of Physics Publishing, 2014) Schultz, P.; Heitzig, J.; Kurths, J.To analyse the relationship between stability against large perturbations and topological properties of a power transmission grid, we employ a statistical analysis of a large ensemble of synthetic power grids, looking for significant statistical relationships between the single-node basin stability measure and classical as well as tailormade weighted network characteristics. This method enables us to predict poor values of single-node basin stability for a large extent of the nodes, offering a node-wise stability estimation at low computational cost. Further, we analyse the particular function of certain network motifs to promote or degrade the stability of the system. Here we uncover the impact of so-called detour motifs on the appearance of nodes with a poor stability score and discuss the implications for power grid design.
- ItemComplex network approach to characterize the statistical features of the sunspot series(Bristol : Institute of Physics Publishing, 2014) Zou, Y.; Small, M.; Liu, Z.; Kurths, J.Complex network approaches have been recently developed as an alternative framework to study the statistical features of time-series data. We perform a visibility-graph analysis on both the daily and monthly sunspot series. Based on the data, we propose two ways to construct the network: one is from the original observable measurements and the other is from a negative-inverse- transformed series. The degree distribution of the derived networks for the strong maxima has clear non-Gaussian properties, while the degree distribution for minima is bimodal. The long-term variation of the cycles is reflected by hubs in the network that span relatively large time intervals. Based on standard network structural measures, we propose to characterize the long-term correlations by waiting times between two subsequent events. The persistence range of the solar cycles has been identified over 15-1000 days by a power-law regime with scaling exponent γ = 2.04 of the occurrence time of two subsequent strong minima. In contrast, a persistent trend is not present in the maximal numbers, although maxima do have significant deviations from an exponential form. Our results suggest some new insights for evaluating existing models.
- ItemIndividual nodes contribution to the mesoscale of complex networks(Bristol : Institute of Physics Publishing, 2014) Klimm, F.; Borge-Holthoefer, J.; Wessel, N.; Kurths, J.; Zamora-Lopez, G.The analysis of complex networks is devoted to the statistical characterization of the topology of graphs at different scales of organization in order to understand their functionality. While the modular structure of networks has become an essential element to better apprehend their complexity, the efforts to characterize the mesoscale of networks have focused on the identification of the modules rather than describing the mesoscale in an informative manner. Here we propose a framework to characterize the position every node takes within the modular configuration of complex networks and to evaluate their function accordingly. For illustration, we apply this framework to a set of synthetic networks, empirical neural networks, and to the transcriptional regulatory network of the Mycobacterium tuberculosis. We find that the architecture of both neuronal and transcriptional networks are optimized for the processing of multisensory information with the coexistence of well-defined modules of specialized components and the presence of hubs conveying information from and to the distinct functional domains.
- ItemFinding recurrence networks' threshold adaptively for a specific time series(Göttingen : Copernicus GmbH, 2014) Eroglu, D.; Marwan, N.; Prasad, S.; Kurths, J.Recurrence-plot-based recurrence networks are an approach used to analyze time series using a complex networks theory. In both approaches-recurrence plots and recurrence networks-, a threshold to identify recurrent states is required. The selection of the threshold is important in order to avoid bias of the recurrence network results. In this paper, we propose a novel method to choose a recurrence threshold adaptively. We show a comparison between the constant threshold and adaptive threshold cases to study period-chaos and even period-period transitions in the dynamics of a prototypical model system. This novel method is then used to identify climate transitions from a lake sediment record.
- ItemLow-dimensional behavior of Kuramoto model with inertia in complex networks(London : Nature Publishing Group, 2014) Ji, P.; Peron, T.K.D.M.; Rodrigues, F.A.; Kurths, J.Low-dimensional behavior of large systems of globally coupled oscillators has been intensively investigated since the introduction of the Ott-Antonsen ansatz. In this report, we generalize the Ott-Antonsen ansatz to second-order Kuramoto models in complex networks. With an additional inertia term, we find a low-dimensional behavior similar to the first-order Kuramoto model, derive a self-consistent equation and seek the time-dependent derivation of the order parameter. Numerical simulations are also conducted to verify our analytical results.