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- ItemQuantification of osseointegration of plasma-polymer coated titanium alloyed implants by means of microcomputed tomography versus histomorphometry(New York [u.a.] : Hindawi, 2015) Gabler, Carolin; Zietz, Carmen; Bieck, Richard; Gƶhler, Rebecca; Lindner, Tobias; Haenle, Maximilian; Finke, Birgit; Meichsner, JĆ¼rgen; Testrich, Holger; Nowottnick, Mathias; Frerich, Bernhard; Bader, RainerA common method to derive both qualitative and quantitative data to evaluate osseointegration of implants is histomorphometry. The present study describes a new image reconstruction algorithm comparing the results of bone-to-implant contact (BIC) evaluated by means of ĀµCT with histomorphometry data. Custom-made conical titanium alloyed (Ti6Al4V) implants were inserted in the distal tibial bone of female Sprague-Dawley rats. Different surface configurations were examined: Ti6Al4V implants with plasma-polymerized allylamine (PPAAm) coating and plasma-polymerized ethylenediamine (PPEDA) coating as well as implants without surface coating. After six weeks postoperatively, tibiae were explanted and BIC was determined by ĀµCT (3D) and afterwards by histomorphometry (2D). In comparison to uncoated Ti6Al4V implants demonstrating low BIC of 32.4% (histomorphometry) and 51.3% (ĀµCT), PPAAm and PPEDA coated implants showed a nonsignificant increase in BIC (histomorphometry: 45.7% and 53.5% and ĀµCT: 51.8% and 62.0%, resp.). Mean BIC calculated by ĀµCT was higher for all surface configurations compared to BIC detected by histomorphometry. Overall, a high correlation coefficient of 0.70 () was found between 3D and 2D quantification of BIC. The Ī¼CT analysis seems to be suitable as a nondestructive and accurate 3D imaging method for the evaluation of the bone-implant interface.
- ItemACTRIS ACSM intercomparison - Part 1: Reproducibility of concentration and fragment results from 13 individual Quadrupole Aerosol Chemical Speciation Monitors (Q-ACSM) and consistency with co-located instruments(MĆ¼nchen : European Geopyhsical Union, 2015) Crenn, V.; Sciare, J.; Croteau, P.L.; Verlhac, S.; Frƶhlich, R.; Belis, C.A.; Aas, W.; ĆijƤlƤ, M.; Alastuey, A.; ArtiƱano, B.; BaisnĆ©e, D.; Bonnaire, N.; Bressi, M.; Canagaratna, M.; Canonaco, F.; Carbone, C.; Cavalli, F.; Coz, E.; Cubison, M.J.; Esser-Gietl, J.K.; Green, D.C.; Gros, V.; Heikkinen, L.; Herrmann, H.; Lunder, C.; MinguillĆ³n, M.C.; MoÄnik, G.; O'Dowd, C.D.; Ovadnevaite, J.; Petit, J.-E.; Petralia, E.; Poulain, L.; Priestman, M.; Riffault, V.; Ripoll, A.; Sarda-EstĆØve, R.; Slowik, J.G.; Setyan, A.; Wiedensohler, A.; Baltensperger, U.; PrĆ©vĆ“t, A.S.H.; Jayne, J.T.; Favez, O.As part of the European ACTRIS project, the first large Quadrupole Aerosol Chemical Speciation Monitor (Q-ACSM) intercomparison study was conducted in the region of Paris for 3 weeks during the late-fall ā early-winter period (NovemberāDecember 2013). The first week was dedicated to the tuning and calibration of each instrument, whereas the second and third were dedicated to side-by-side comparison in ambient conditions with co-located instruments providing independent information on submicron aerosol optical, physical, and chemical properties. Near real-time measurements of the major chemical species (organic matter, sulfate, nitrate, ammonium, and chloride) in the non-refractory submicron aerosols (NR-PM1) were obtained here from 13 Q-ACSM. The results show that these instruments can produce highly comparable and robust measurements of the NR-PM1 total mass and its major components. Taking the median of the 13 Q-ACSM as a reference for this study, strong correlations (r2 > 0.9) were observed systematically for each individual Q-ACSM across all chemical families except for chloride for which three Q-ACSMs showing weak correlations partly due to the very low concentrations during the study. Reproducibility expanded uncertainties of Q-ACSM concentration measurements were determined using appropriate methodologies defined by the International Standard Organization (ISO 17025, 1999) and were found to be 9, 15, 19, 28, and 36 % for NR-PM1, nitrate, organic matter, sulfate, and ammonium, respectively. However, discrepancies were observed in the relative concentrations of the constituent mass fragments for each chemical component. In particular, significant differences were observed for the organic fragment at mass-to-charge ratio 44, which is a key parameter describing the oxidation state of organic aerosol. Following this first major intercomparison exercise of a large number of Q-ACSMs, detailed intercomparison results are presented, along with a discussion of some recommendations about best calibration practices, standardized data processing, and data treatment.
- ItemMultichannel analysis of correlation length of SEVIRI images around ground-based cloud observatories to determine their representativeness(MĆ¼nchen : European Geopyhsical Union, 2015) Slobodda, J.; HĆ¼nerbein, A.; Lindstrot, R.; Preusker, R.; Ebell, K.; Fischer, J.Images of measured radiance in different channels of the geostationary Meteosat-9 SEVIRI instrument are analysed with respect to the representativeness of the observations of eight cloud observatories in Europe (e.g. measurements from cloud radars or microwave radiometers). Cloudy situations are selected to get a time series for every pixel in a 300 km Ć 300 km area centred around each ground station. Then a cross correlation of each time series to the pixel nearest to the corresponding ground site is calculated. In the end a correlation length is calculated to define the representativeness. It is found that measurements in the visible and near infrared channels, which respond to cloud physical properties, are correlated in an area with a 1 to 4 km radius, while the thermal channels, that correspond to cloud top temperature, are correlated to a distance of about 20 km. This also points to a higher variability of the cloud microphysical properties inside a cloud than of the cloud top temperature. The correlation length even increases for the channels at 6.2, 7.3 and 9.7 Ī¼m. They respond to radiation from the upper atmospheric layers emitted by atmospheric gases and higher level clouds, which are more homogeneous than low-level clouds. Additionally, correlations at different distances, corresponding to the grid box sizes of forecast models, were compared. The results suggest the possibility of comparisons between instantaneous cloud observations from ground sites and regional forecast models and ground-based measurements. For larger distances typical for global models the correlations decrease, especially for short-wave measurements and corresponding cloud products. By comparing daily means, the correlation length of each station is increased to about 3 to 10 times the value of instantaneous measurements and also the comparability to models grows.
- ItemA neutral low-coordinate heterocyclic bismuth-tin species(Cambridge : Soc., 2015) Hering-Junghans, C.; Schulz, A.; Villinger, A.The reaction of distannadiazane bearing bulky RAr*-groups (RAr* = C6H2{C(H)Ph2}2R-2,6,4; R = iPr, tBu) with ECl3 (E = Sb, Bi) was studied resulting in the isolation of previously unknown N,N-bis(dichloropnictino)amines (3) and a novel heterocyclic carbenoid bismuth species (4) bearing a Bi(III) and a Sn(IV) center. The structure and bonding was investigated by means of X-ray structure elucidations and DFT calculations.
- ItemLocal difference measures between complex networks for dynamical system model evaluation(San Francisco, CA : Public Library of Science (PLoS), 2015) Lange, S.; Donges, J.F.; Volkholz, J.; Kurths, J.
- ItemComparison of storm damage functions and their performance(Gƶttingen : Copernicus GmbH, 2015) Prahl, B.F.; Rybski, D.; Burghoff, O.; Kropp, J.P.
- ItemACTRIS ACSM intercomparison - Part 2: Intercomparison of ME-2 organic source apportionment results from 15 individual, co-located aerosol mass spectrometers(MĆ¼nchen : European Geopyhsical Union, 2015) Frƶhlich, R.; Crenn, V.; Setyan, A.; Belis, C.A.; Canonaco, F.; Favez, O.; Riffault, V.; Slowik, J.G.; Aas, W.; AijƤlƤ, M.; Alastuey, A.; ArtiƱano, B.; Bonnaire, N.; Bozzetti, C.; Bressi, M.; Carbone, C.; Coz, E.; Croteau, P.L.; Cubison, M.J.; Esser-Gietl, J.K.; Green, D.C.; Gros, V.; Heikkinen, L.; Herrmann, H.; Jayne, J.T.; Lunder, C.R.; MinguillĆ³n, M.C.; MoÄnik, G.; O'Dowd, C.D.; Ovadnevaite, J.; Petralia, E.; Poulain, L.; Priestman, M.; Ripoll, A.; Sarda-EstĆØve, R.; Wiedensohler, A.; Baltensperger, U.; Sciare, J.; PrĆ©vĆ“t, A.S.H.Chemically resolved atmospheric aerosol data sets from the largest intercomparison of the Aerodyne aerosol chemical speciation monitors (ACSMs) performed to date were collected at the French atmospheric supersite SIRTA. In total 13 quadrupole ACSMs (Q-ACSM) from the European ACTRIS ACSM network, one time-of-flight ACSM (ToF-ACSM), and one high-resolution ToF aerosol mass spectrometer (AMS) were operated in parallel for about 3 weeks in November and December~2013. Part 1 of this study reports on the accuracy and precision of the instruments for all the measured species. In this work we report on the intercomparison of organic components and the results from factor analysis source apportionment by positive matrix factorisation (PMF) utilising the multilinear engine 2 (ME-2). Except for the organic contribution of mass-to-charge ratio m/z 44 to the total organics (f44), which varied by factors between 0.6 and 1.3 compared to the mean, the peaks in the organic mass spectra were similar among instruments. The m/z 44 differences in the spectra resulted in a variable f44 in the source profiles extracted by ME-2, but had only a minor influence on the extracted mass contributions of the sources. The presented source apportionment yielded four factors for all 15 instruments: hydrocarbon-like organic aerosol (HOA), cooking-related organic aerosol (COA), biomass burning-related organic aerosol (BBOA) and secondary oxygenated organic aerosol (OOA). ME-2 boundary conditions (profile constraints) were optimised individually by means of correlation to external data in order to achieve equivalent / comparable solutions for all ACSM instruments and the results are discussed together with the investigation of the influence of alternative anchors (reference profiles). A comparison of the ME-2 source apportionment output of all 15 instruments resulted in relative standard deviations (SD) from the mean between 13.7 and 22.7 % of the source's average mass contribution depending on the factors (HOA: 14.3 Ā± 2.2 %, COA: 15.0 Ā± 3.4 %, OOA: 41.5 Ā± 5.7 %, BBOA: 29.3 Ā± 5.0 %). Factors which tend to be subject to minor factor mixing (in this case COA) have higher relative uncertainties than factors which are recognised more readily like the OOA. Averaged over all factors and instruments the relative first SD from the mean of a source extracted with ME-2 was 17.2 %.
- ItemA comprehensive laboratory study on the immersion freezing behavior of illite NX particles: A comparison of 17 ice nucleation measurement techniques(MĆ¼nchen : European Geopyhsical Union, 2015) Hiranuma, N.; Augustin-Bauditz, S.; Bingemer, H.; Budke, C.; Curtius, J.; Danielczok, A.; Diehl, K.; Dreischmeier, K.; Ebert, M.; Frank, F.; Hoffmann, N.; Kandler, K.; Kiselev, A.; Koop, T.; Leisner, T.; Mƶhler, O.; Nillius, B.; Peckhaus, A.; Rose, D.; Weinbruch, S.; Wex, H.; Boose, Y.; DeMott, P.J.; Hader, J.D.; Hill, T.C.J.; Kanji, Z.A.; Kulkarn, G.; Levin, E.J.T.; McCluskey, C.S.; Murakami, M.; Murray, B.J.; Niedermeier, D.; Petters, M.D.; O'Sullivan, D.; Saito, A.; Schill, G.P.; Tajiri, T.; Tolbert, M.A.; Welti, A.; Whale, T.F.; Wright, T.P.; Yamashita, K.Immersion freezing is the most relevant heterogeneous ice nucleation mechanism through which ice crystals are formed in mixed-phase clouds. In recent years, an increasing number of laboratory experiments utilizing a variety of instruments have examined immersion freezing activity of atmospherically relevant ice-nucleating particles. However, an intercomparison of these laboratory results is a difficult task because investigators have used different ice nucleation (IN) measurement methods to produce these results. A remaining challenge is to explore the sensitivity and accuracy of these techniques and to understand how the IN results are potentially influenced or biased by experimental parameters associated with these techniques. Within the framework of INUIT (Ice Nuclei Research Unit), we distributed an illite-rich sample (illite NX) as a representative surrogate for atmospheric mineral dust particles to investigators to perform immersion freezing experiments using different IN measurement methods and to obtain IN data as a function of particle concentration, temperature (T), cooling rate and nucleation time. A total of 17 measurement methods were involved in the data intercomparison. Experiments with seven instruments started with the test sample pre-suspended in water before cooling, while 10 other instruments employed water vapor condensation onto dry-dispersed particles followed by immersion freezing. The resulting comprehensive immersion freezing data set was evaluated using the ice nucleation active surface-site density, ns, to develop a representative ns(T) spectrum that spans a wide temperature range (ā37 Ā°C < T < ā11 Ā°C) and covers 9 orders of magnitude in ns. In general, the 17 immersion freezing measurement techniques deviate, within a range of about 8 Ā°C in terms of temperature, by 3 orders of magnitude with respect to ns. In addition, we show evidence that the immersion freezing efficiency expressed in ns of illite NX particles is relatively independent of droplet size, particle mass in suspension, particle size and cooling rate during freezing. A strong temperature dependence and weak time and size dependence of the immersion freezing efficiency of illite-rich clay mineral particles enabled the ns parameterization solely as a function of temperature. We also characterized the ns(T) spectra and identified a section with a steep slope between ā20 and ā27 Ā°C, where a large fraction of active sites of our test dust may trigger immersion freezing. This slope was followed by a region with a gentler slope at temperatures below ā27 Ā°C. While the agreement between different instruments was reasonable below ~ ā27 Ā°C, there seemed to be a different trend in the temperature-dependent ice nucleation activity from the suspension and dry-dispersed particle measurements for this mineral dust, in particular at higher temperatures. For instance, the ice nucleation activity expressed in ns was smaller for the average of the wet suspended samples and higher for the average of the dry-dispersed aerosol samples between about ā27 and ā18 Ā°C. Only instruments making measurements with wet suspended samples were able to measure ice nucleation above ā18 Ā°C. A possible explanation for the deviation between ā27 and ā18 Ā°C is discussed. Multiple exponential distribution fits in both linear and log space for both specific surface area-based ns(T) and geometric surface area-based ns(T) are provided. These new fits, constrained by using identical reference samples, will help to compare IN measurement methods that are not included in the present study and IN data from future IN instruments.
- ItemIntercomparing different devices for the investigation of ice nucleating particles using SnomaxĀ® as test substance(MĆ¼nchen : European Geopyhsical Union, 2015) Wex, H.; Augustin-Bauditz, S.; Boose, Y.; Budke, C.; Curtius, J.; Diehl, K.; Dreyer, A.; Frank, F.; Hartmann, S.; Hiranuma, N.; Jantsch, E.; Kanji, Z.A.; Kiselev, A.; Koop, T.; Mƶhler, O.; Niedermeier, D.; Nillius, B.; Rƶsch, M.; Rose, D.; Schmidt, C.; Steinke, I.; Stratmann, F.Seven different instruments and measurement methods were used to examine the immersion freezing of bacterial ice nuclei from SnomaxĀ® (hereafter Snomax), a product containing ice-active protein complexes from non-viable Pseudomonas syringae bacteria. The experimental conditions were kept as similar as possible for the different measurements. Of the participating instruments, some examined droplets which had been made from suspensions directly, and the others examined droplets activated on previously generated Snomax particles, with particle diameters of mostly a few hundred nanometers and up to a few micrometers in some cases. Data were obtained in the temperature range from ā2 to ā38 Ā°C, and it was found that all ice-active protein complexes were already activated above ā12 Ā°C. Droplets with different Snomax mass concentrations covering 10 orders of magnitude were examined. Some instruments had very short ice nucleation times down to below 1 s, while others had comparably slow cooling rates around 1 K minā1. Displaying data from the different instruments in terms of numbers of ice-active protein complexes per dry mass of Snomax, nm, showed that within their uncertainty, the data agree well with each other as well as to previously reported literature results. Two parameterizations were taken from literature for a direct comparison to our results, and these were a time-dependent approach based on a contact angle distribution (Niedermeier et al., 2014) and a modification of the parameterization presented in Hartmann et al. (2013) representing a time-independent approach. The agreement between these and the measured data were good; i.e., they agreed within a temperature range of 0.6 K or equivalently a range in nm of a factor of 2. From the results presented herein, we propose that Snomax, at least when carefully shared and prepared, is a suitable material to test and compare different instruments for their accuracy of measuring immersion freezing.
- ItemSimultaneous statistical inference for epigenetic data(San Francisco, California, US : PLOS, 2015) Schildknecht, Konstantin; Olek, Sven; Dickhaus, ThorstenEpigenetic research leads to complex data structures. Since parametric model assumptions for the distribution of epigenetic data are hard to verify we introduce in the present work a nonparametric statistical framework for two-group comparisons. Furthermore, epigenetic analyses are often performed at various genetic loci simultaneously. Hence, in order to be able to draw valid conclusions for specific loci, an appropriate multiple testing correction is necessary. Finally, with technologies available for the simultaneous assessment of many interrelated biological parameters (such as gene arrays), statistical approaches also need to deal with a possibly unknown dependency structure in the data. Our statistical approach to the nonparametric comparison of two samples with independent multivariate observables is based on recently developed multivariate multiple permutation tests. We adapt their theory in order to cope with families of hypotheses regarding relative effects. Our results indicate that the multivariate multiple permutation test keeps the pre-assigned type I error level for the global null hypothesis. In combination with the closure principle, the family-wise error rate for the simultaneous test of the corresponding locus/parameter-specific null hypotheses can be controlled. In applications we demonstrate that group differences in epigenetic data can be detected reliably with our methodology.