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- ItemEffects of Drought and Heat on Photosynthetic Performance, Water Use and Yield of Two Selected Fiber Hemp Cultivars at a Poor-Soil Site in Brandenburg (Germany)(Basel : MDPI, 2020) Herppich, Werner B.; Gusovius, Hans-Jörg; Flemming, Inken; Drastig, KatrinHemp currently regains certain importance as fiber, oil and medical crop not least because of its modest requirements of biocides, fertilizer and water. During recent years, crops were exposed to a combination of drought and heat, even in northern Central-Europe. Dynamic responses of photosynthesis and stomatal conductance to these stresses and their persistent effects had been studied, if at all, in controlled environment experiments. Comprehensive field studies on diurnal and long-term net photosynthesis and gas exchange, and yield properties of hemp during a drought prone, high-temperature season in northern Central-Europe are obviously missing. Thus, in whole season field trails, the essential actual physiological (rates of net photosynthesis and transpiration, stomatal conductance, water use efficiencies, ambient and internal CO2 concentrations) and the yield performance of modern high-yielding multi-purpose hemp cultivars, ‘Ivory’ and ‘Santhica 27’, were evaluated under extreme environmental conditions and highly limited soil water supply. This provides comprehensive information on the usability of these cultivars under potential future harsh production conditions. Plants of both cultivars differentially cope with the prevailing climatic and soil water conditions. While ‘Ivory’ plants developed high rates of CO2 gain and established large leaf area per plant in the mid-season, those of ‘Santhica 27’ utilized lower CO2 uptake rates at lower leaf area per plant most time. This and the higher germination success of ‘Santhica 27’ resulted in nearly twice the yield compared to ‘Ivory’. Although stomatal control of CO2 gain was pronounced in both cultivars, higher stomatal limitations in ‘Ivory’ plants resulted in higher overall intrinsic water use efficiency. Cultivation of both hemp cultivars with only basic irrigation during seed germination was successful and without large effects on yield and quality. This was valid even under extremely hot and dry climatic conditions in northern Central Europe.
- ItemDNA and RNA extraction and quantitative real-time PCR-based assays for biogas biocenoses in an interlaboratory comparison(Basel : MDPI, 2016) Lebuhn, Michael; Derenkó, Jaqueline; Rademacher, Antje; Helbig, Susanne; Munk, Bernhard; Pechtl, Alexander; Stolze, Yvonne; Prowe, Steffen; Schwarz, Wolfgang H.; Schlüter, Andreas; Liebl, Wolfgang; Klocke, MichaelFive institutional partners participated in an interlaboratory comparison of nucleic acid extraction, RNA preservation and quantitative Real-Time PCR (qPCR) based assays for biogas biocenoses derived from different grass silage digesting laboratory and pilot scale fermenters. A kit format DNA extraction system based on physical and chemical lysis with excellent extraction efficiency yielded highly reproducible results among the partners and clearly outperformed a traditional CTAB/chloroform/isoamylalcohol based method. Analytical purpose, sample texture, consistency and upstream pretreatment steps determine the modifications that should be applied to achieve maximum efficiency in the trade-off between extract purity and nucleic acid recovery rate. RNA extraction was much more variable, and the destination of the extract determines the method to be used. RNA stabilization with quaternary ammonium salts was an as satisfactory approach as flash freezing in liquid N2. Due to co-eluted impurities, spectrophotometry proved to be of limited value for nucleic acid qualification and quantification in extracts obtained with the kit, and picoGreen® based quantification was more trustworthy. Absorbance at 230 nm can be extremely high in the presence of certain chaotropic guanidine salts, but guanidinium isothiocyanate does not affect (q)PCR. Absolute quantification by qPCR requires application of a reliable internal standard for which correct PCR efficiency and Y-intercept values are important and must be reported.
- ItemCan Green Plants Mitigate Ammonia Concentration in Piglet Barns?(Basel : MDPI, 2021) Menardo, Simona; Berg, Werner; Grüneberg, Heiner; Jakob, MartinaFor animal welfare and for farmers’ health, the concentration of ammonia (NH3 ) in animal houses should be as low as possible. Plants can remove various atmospheric contaminants through the leaf stomata. This study examined the effect of ornamental plants installed inside a piglet barn on the NH3 concentration in the air. Gas measurements of the air in the ‘greened’ compartment (P) and a control compartment (CTR) took place over two measuring periods (summer–autumn and winter). Differences between the NH3 emissions were calculated based on the ventilation rates according to the CO2 balance. Fairly low mean NH3 concentrations between 2 and 4 ppm were measured. The NH3 emissions were about 20% lower (p < 0.01) in P than in CTR, in summer–autumn and in winter period. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
- ItemFactors That Influence Nitrous Oxide Emissions from Agricultural Soils as Well as Their Representation in Simulation Models: A Review(Basel : MDPI, 2021-4-14) Wang, Cong; Amon, Barbara; Schulz, Karsten; Mehdi, BanoNitrous oxide (N2O) is a long-lived greenhouse gas that contributes to global warming. Emissions of N2O mainly stem from agricultural soils. This review highlights the principal factors from peer-reviewed literature affecting N2O emissions from agricultural soils, by grouping the factors into three categories: environmental, management and measurement. Within these categories, each impact factor is explained in detail and its influence on N2O emissions from the soil is summarized. It is also shown how each impact factor influences other impact factors. Process-based simulation models used for estimating N2O emissions are reviewed regarding their ability to consider the impact factors in simulating N2O. The model strengths and weaknesses in simulating N2O emissions from managed soils are summarized. Finally, three selected process-based simulation models (Daily Century (DAYCENT), DeNitrification-DeComposition (DNDC), and Soil and Water Assessment Tool (SWAT)) are discussed that are widely used to simulate N2O emissions from cropping systems. Their ability to simulate N2O emissions is evaluated by describing the model components that are relevant to N2O processes and their representation in the model.
- ItemImpact of Camera Viewing Angle for Estimating Leaf Parameters of Wheat Plants from 3D Point Clouds(Basel : MDPI, 2021) Li, Minhui; Shamshiri, Redmond R.; Schirrmann, Michael; Weltzien, CorneliaEstimation of plant canopy using low-altitude imagery can help monitor the normal growth status of crops and is highly beneficial for various digital farming applications such as precision crop protection. However, extracting 3D canopy information from raw images requires studying the effect of sensor viewing angle by taking into accounts the limitations of the mobile platform routes inside the field. The main objective of this research was to estimate wheat (Triticum aestivum L.) leaf parameters, including leaf length and width, from the 3D model representation of the plants. For this purpose, experiments with different camera viewing angles were conducted to find the optimum setup of a mono-camera system that would result in the best 3D point clouds. The angle-control analytical study was conducted on a four-row wheat plot with a row spacing of 0.17 m and with two seeding densities and growth stages as factors. Nadir and six oblique view image datasets were acquired from the plot with 88% overlapping and were then reconstructed to point clouds using Structure from Motion (SfM) and Multi-View Stereo (MVS) methods. Point clouds were first categorized into three classes as wheat canopy, soil background, and experimental plot. The wheat canopy class was then used to extract leaf parameters, which were then compared with those values from manual measurements. The comparison between results showed that (i) multiple-view dataset provided the best estimation for leaf length and leaf width, (ii) among the single-view dataset, canopy, and leaf parameters were best modeled with angles vertically at -45⸰_ and horizontally at 0⸰_ (VA -45, HA 0), while (iii) in nadir view, fewer underlying 3D points were obtained with a missing leaf rate of 70%. It was concluded that oblique imagery is a promising approach to effectively estimate wheat canopy 3D representation with SfM-MVS using a single camera platform for crop monitoring. This study contributes to the improvement of the proximal sensing platform for crop health assessment. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
- ItemCarbon Budget of an Agroforestry System after Being Converted from a Poplar Short Rotation Coppice(Basel : MDPI, 2020) Pecchioni, Giovanni; Bosco, Simona; Volpi, Iride; Mantino, Alberto; Dragoni, Federico; Giannini, Vittoria; Tozzini, Cristiano; Mele, Marcello; Ragaglini, GiorgioPoplar (Populus L. spp.) Short Rotation Coppice systems (SRCs) for bioenergy production are being converted back to arable land. Transitioning to Alley Cropping Systems (ACSs) could be a suitable strategy for integrating former tree rows and arable crops. A field trial (Pisa, Central Italy) was set up with the aim of assessing the C storage of an ACS system based on hybrid poplar and sorghum (Sorghum bicolor L. Moench) and comparing it with that of an SRC cultivation system. The carbon budget at the agroecosystem scale was assessed in the first year of the transition using the net biome production (NBP) approach with a simplified method. The overall NBP for the SRC was positive (96 ± 40 g C m−2 year−1), highlighting that the system was a net carbon sink (i.e., NBP > 0). However, the ACS registered a net C loss (i.e., NBP < 0), since the NBP was −93 ± 56 g C m−2 year−1. In the first year of the transition, converting the SRC into an ACS counteracted the potential beneficial effect of C storage in tree belowground biomass due to the high heterotrophic respiration rate recorded in the ACS, which was fostered by the incorporation of residues and tillage disturbance in the alley. Additional years of heterotrophic respiration measurements could allow for an estimate of the speed and extent of C losses.
- ItemThe Effect of Diet and Farm Management on N2O Emissions from Dairy Farms Estimated from Farm Data(Basel : MDPI, 2021) Menardo, Simona; Lanza, Giacomo; Berg, WernerThe N2O emissions of 21 dairy farms in Germany were evaluated to determine the feasi-bility of an estimation of emissions from farm data and the effects of the farm management, along with possible mitigation strategies. Emissions due to the application of different fertilisers, manure storage and grazing were calculated based on equations from the IPCC (Intergovernmental Panel of Climate Change) and German emission inventory. The dependence of the N2O emissions on fertiliser type and quantity, cultivated crops and diet composition was assessed via correlation analysis and linear regression. The N2O emissions ranged between 0.11 and 0.29 kg CO2eq per kilogram energy-corrected milk, with on average 60% resulting from fertilisation and less than 30% from fertiliser storage and field applications. The total emissions had a high dependence on the diet composition; in particular, on the grass/maize ratio and the protein content of the animal diet, as well as from the manure management. A linear model for the prediction of the N2O emissions based on the diet composition and the fertilisation reached a predictive power of R2 = 0.89. As a possible mitigation strategy, the substitution of slurry for solid manure would reduce N2O emissions by 40%. Feeding cows maize-based diets instead of grass-based diets could reduce them by 14%. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
- ItemHydrothermal Carbonization and Pyrolysis of Sewage Sludge: Effects on Lolium perenne Germination and Growth(Basel : MDPI, 2019) Paneque, Marina; Knicker, Heike; Kern, Jürgen; De la Rosa, José MarÃaThe pyrolysis and hydrothermal carbonization (HTC) of sewage sludge (SS) resulted in products free of pathogens, with the potential for being used as soil amendment. With this work, we evaluated the impact of dry pyrolysis-treated (600 °C, 1 h) and HTC-treated (200 °C, 260 °C; 0.5 h, 3 h) SS on the germination, survival, and growth of Lolium perenne during an 80 day greenhouse experiment. Therefore, the hydrochars and pyrochars were amended to a Calcic Cambisol at doses of 5 and 25 t ha−1. The addition of sludge pyrochars to the Cambisol did not affect Lolium germination, survival rates or plant yields. However, the use 25 t ha−1 of wood biochar reduced germination and survival rates, which may be related to the low N availability of this sample. In comparison to the control, higher or equal plant biomass was produced in the hydrochar-amended pots, even though some hydrochars decreased plant germination and survival rates. Among all the evaluated char properties, only the organic and inorganic N contents of the chars, along with their organic C values, positively correlated with total and shoot biomass production. Our work demonstrates the N fertilization potential of the hydrochar produced at low temperature, whereas the hydrochar produced at 260 °C and the pyrochars were less efficient with respect to plant yields.
- ItemIndicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants(Basel : MDPI, 2021) Hassa, Julia; Klang, Johanna; Benndorf, Dirk; Pohl, Marcel; Hülsemann, Benedikt; Mächtig, Torsten; Effenberger, Mathias; Pühler, Alfred; Schlüter, Andreas; Theuerl, SusanneThere are almost 9500 biogas plants in Germany, which are predominantly operated with energy crops and residues from livestock husbandry over the last two decades. In the future, biogas plants must be enabled to use a much broader range of input materials in a flexible and demand-oriented manner. Hence, the microbial communities will be exposed to frequently varying process conditions, while an overall stable process must be ensured. To accompany this transition, there is the need to better understand how biogas microbiomes respond to management measures and how these responses affect the process efficiency. Therefore, 67 microbiomes originating from 49 agricultural, full-scale biogas plants were taxonomically investigated by 16S rRNA gene amplicon sequencing. These microbiomes were separated into three distinct clusters and one group of outliers, which are characterized by a specific distribution of 253 indicative taxa and their relative abundances. These indicative taxa seem to be adapted to specific process conditions which result from a different biogas plant operation. Based on these results, it seems to be possible to deduce/assess the general process condition of a biogas digester based solely on the microbiome structure, in particular on the distribution of specific indicative taxa, and without knowing the corresponding operational and chemical process parameters. Perspectively, this could allow the development of detection systems and advanced process models considering the microbial diversity.
- ItemThe Role of Streptococcus spp. in Bovine Mastitis(Basel : MDPI, 2021) Kabelitz, Tina; Aubry, Etienne; van Vorst, Kira; Amon, Thomas; Fulde, MarcusThe Streptococcus genus belongs to one of the major pathogen groups inducing bovine mastitis. In the dairy industry, mastitis is the most common and costly disease. It not only negatively impacts economic profit due to milk losses and therapy costs, but it is an important animal health and welfare issue as well. This review describes a classification, reservoirs, and frequencies of the most relevant Streptococcus species inducing bovine mastitis (S. agalactiae, S. dysgalactiae and S. uberis). Host and environmental factors influencing mastitis susceptibility and infection rates will be discussed, because it has been indicated that Streptococcus herd prevalence is much higher than mastitis rates. After infection, we report the sequence of cow immune reactions and differences in virulence factors of the main Streptococcus species. Different mastitis detection techniques together with possible conventional and alternative therapies are described. The standard approach treating streptococcal mastitis is the application of ß-lactam antibiotics. In streptococci, increased antimicrobial resistance rates were identified against enrofloxacin, tetracycline, and erythromycin. At the end, control and prevention measures will be considered, including vaccination, hygiene plan, and further interventions. It is the aim of this review to estimate the contribution and to provide detailed knowledge about the role of the Streptococcus genus in bovine mastitis.