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- ItemIdentification and molecular analysis of interaction sites in the MtSEO-F1 protein involved in forisome assembly(New York, NY [u.a.] : Elsevier, 2020) Rose, Judith; Visser, Franziska; Müller, Boje; Senft, Matthias; Groscurth, Sira; Sicking, Kevin F.; Twyman, Richard M.; Prüfer, Dirk; Noll, Gundula A.Forisomes are large mechanoprotein complexes found solely in legumes such as Medicago truncatula. They comprise several “sieve element occlusion by forisome” (SEO-F) subunits, with MtSEO-F1 as the major structure-forming component. SEO-F proteins possess three conserved domains –an N-terminal domain (SEO-NTD), a potential thioredoxin fold, and a C-terminal domain (SEO-CTD)– but structural and biochemical data are scarce and little is known about the contribution of these domains to forisome assembly. To identify key amino acids involved in MtSEO-F1 dimerization and complex formation, we investigated protein-protein interactions by bimolecular fluorescence complementation and the analysis of yeast two-hybrid and random mutagenesis libraries. We identified a SEO-NTD core region as the major dimerization site, with abundant hydrophobic residues and rare charged residues suggesting dimerization is driven by the hydrophobic effect. We also found that ~45% of the full-length MtSEO-F1 sequence must be conserved for higher-order protein assembly, indicating that large interaction surfaces facilitate stable interactions, contributing to the high resilience of forisome bodies. Interestingly, the removal of 62 amino acids from the C-terminus did not disrupt forisome assembly. This is the first study unraveling interaction sites and mechanisms within the MtSEO-F1 protein at the level of dimerization and complex formation. © 2018
- ItemPrimarily tests of a optoelectronic in-canopy sensor for evaluation of vertical disease infection in cereals(New York, NY : Wiley, 2022) Dammer, Karl-Heinz; Schirrmann, MichaelBACKGROUND: Health scouting of crops by satellite, airplanes, unmanned aerial (UAV) and ground vehicles can only evaluate the crop from above. The visible leaves may show no disease symptoms, but lower, older leaves not visible from above can do. A mobile in-canopy sensor was developed, carried by a tractor to detect diseases in cereal crops. Photodiodes measure the reflected light in the red and infrared wavelength range at 10 different vertical heights in lateral directions. RESULTS: Significant differences occurred in the vegetation index NDVI of sensor levels operated inside and near the winter wheat canopy between infected (stripe rust: 2018, 2019 / leaf rust: 2020) and control plots. The differences were not significant at those sensor levels operated far above the canopy. CONCLUSIONS: Lateral reflectance measurements inside the crop canopy are able to distinguish between disease-infected and healthy crops. In future mobile in-canopy scouting could be an extension to the common above-canopy scouting praxis for making spraying decisions by the farmer or decision support systems. © 2021 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
- ItemExploitation of Ultrasound Technique for Enhancement of Microbial Metabolites Production(Basel : MDPI AG, 2020) Behzadnia, Asma; Moosavi-Nasab, Marzieh; Ojha, Shikha; Tiwari, Brijesh K.Microbial metabolites have significant impacts on our lives from providing valuable compounds for nutrition to agriculture and healthcare. Ever-growing demand for these natural compounds has led to the need for smart and efficient production techniques. Ultrasound is a multi-applicable technology widely exploited in a range of industries such as chemical, medical, biotechnological, pharmaceutical, and food processes. Depending on the type of ultrasound employed, it can be used to either monitor or drive fermentation processes. Ultrasonication can improve bioproduct productivity via intensifying the performance of living organisms. Controlled ultrasonication can influence the metabolites' biosynthesis efficiency and growth rates by improvement of cell permeability as well as mass transfer and nutrient uptake rates through cell membranes. This review contains a summarized description about suitable microbial metabolites and the applications of ultrasound technique for enhancement of the production of these metabolites as well as the associated downstream processing.
- ItemModel-based characterisation of growth performance and l-lactic acid production with high optical purity by thermophilic Bacillus coagulans in a lignin-supplemented mixed substrate medium(New York, NY [u.a.] : Elsevier, 2017) Glaser, Robert; Venus, JoachimThree Bacillus coagulans strains were characterised in terms of their ability to grow in lignin-containing fermentation media and to consume the lignocellulose-related sugars glucose, xylose, and arabinose. An optical-density high-throughput screening was used for precharacterisation by means of different mathematical models for comparison (Logistic, Gompertz, Baranyi, Richards & Stannard, and Schnute). The growth response was characterised by the maximum growth rate and lag time. For a comparison of the screening and fermentation results, an unstructured mathematical model was proposed to characterise the lactate production, bacterial growth and substrate consumption. The growth model was then applied to fermentation procedures using wheat straw hydrolysates. The results indicated that the unstructured growth model can be used to evaluate lactate producing fermentation. Under the experimental fermentation conditions, one strain showed the ability to tolerate a high lignin concentration (2.5 g/L) but lacked the capacity for sufficient pentose uptake. The lactate yield of the strains that were able to consume all sugar fractions of glucose, xylose and arabinose was ∼83.4%. A photometric measurement at 280 nm revealed a dynamic change in alkali-lignin concentrations during lactate producing fermentation. A test of decolourisation of vanillin, ferulic acid, and alkali-lignin samples also showed the decolourisation performance of the B. coagulans strains under study. © 2017 The Author(s)
- ItemExperimental evaluation and application of genetic programming to develop predictive correlations for hydrochar higher heating value and yield to optimize the energy content(Amsterdam [u.a.] : Elsevier, 2022) Marzban, Nader; Libra, Judy A.; Hosseini, Seyyed Hossein; Fischer, Marcus G.; Rotter, Vera SusanneThe hydrothermal carbonization (HTC) process has been found to consistently improve biomass fuel characteristics by raising the higher heating value (HHV) of the hydrochar as process severity is increased. However, this is usually associated with a decrease in the solid yield (SY) of hydrochar, making it difficult to determine the optimal operating conditions to obtain the highest energy yield (EY), which combines the two parameters. In this study, a graph-based genetic programming (GP) method was used for developing correlations to predict HHV, SY, and EY for hydrochars based on published values from 42 biomasses and a broad range of HTC experimental systems and operating conditions, i.e., 5 ≤ holding time (min) ≤ 2208, 120 ≤ temperature (°C) ≤ 300, and 0. 0096 ≤ biomass to water ratio ≤ 0.5. In addition, experiments were carried out with 5 pomaces at 4 temperatures and two reactor scales, 1 L and 18.75 L. The correlations were evaluated using this experimental data set in order to estimate prediction errors in similar experimental systems. The use of the correlations to predict HTC conditions to achieve the maximum EY is demonstrated for three common feedstocks, wheat straw, sewage sludge, and a fruit pomace. The prediction was confirmed experimentally with pomace at the optimized HTC conditions; we observed 6.9 % error between the measured and predicted EY %. The results show that the correlations can be used to predict the optimal operating conditions to produce hydrochar with the desired fuel characteristics with a minimum of actual HTC runs.
- ItemToward the Standardization of Biochar Analysis: The COST Action TD1107 Interlaboratory Comparison(Washington, DC [u.a.] : ACS Publications, 2016) Bachmann, Hans Jörg; Bucheli, Thomas D.; Dieguez-Alonso, Alba; Fabbri, Daniele; Knicker, Heike; Schmidt, Hans-Peter; Ulbricht, Axel; Becker, Roland; Buscaroli, Alessandro; Buerge, Diane; Cross, Andrew; Dickinson, Dane; Enders, Akio; Esteves, Valdemar I.; Evangelou, Michael W.H.; Fellet, Guido; Friedrich, Kevin; Gasco Guerrero, Gabriel; Glaser, Bruno; Hanke, Ulrich M.; Hanley, Kelly; Hilber, Isabel; Kalderis, Dimitrios; Leifeld, Jens; Masek, Ondrej; Mumme, Jan; Paneque Carmona, Marina; Calvelo Pereira, Roberto; Rees, Frederic; Rombolà, Alessandro G.; de la Rosa, José Maria; Sakrabani, Ruben; Sohi, Saran; Soja, Gerhard; Valagussa, Massimo; Verheijen, Frank; Zehetner, FranzBiochar produced by pyrolysis of organic residues is increasingly used for soil amendment and many other applications. However, analytical methods for its physical and chemical characterization are yet far from being specifically adapted, optimized, and standardized. Therefore, COST Action TD1107 conducted an interlaboratory comparison in which 22 laboratories from 12 countries analyzed three different types of biochar for 38 physical–chemical parameters (macro- and microelements, heavy metals, polycyclic aromatic hydrocarbons, pH, electrical conductivity, and specific surface area) with their preferential methods. The data were evaluated in detail using professional interlaboratory testing software. Whereas intralaboratory repeatability was generally good or at least acceptable, interlaboratory reproducibility was mostly not (20% < mean reproducibility standard deviation < 460%). This paper contributes to better comparability of biochar data published already and provides recommendations to improve and harmonize specific methods for biochar analysis in the future.
- ItemA simple biorefinery concept to produce 2g-lactic acid from Sugar Beet Pulp (SBP): A high-value target approach to valorize awaste stream(Basel : MDPI AG, 2020) De Oliveira, Regiane Alves; Schneider, Roland; Lunelli, Betânia Hoss; Rossell, Carlos Eduardo Vaz; Filho, Rubens Maciel; Venus, JoachimLactic acid is a high-value molecule with a vast number of applications. Its production in the biorefineries model is a possibility for this sector to aggregate value to its production chain. Thus, this investigation presents a biorefinery model based on the traditional sugar beet industry proposing an approach to produce lactic acid from a waste stream. Sugar beet is used to produce sugar and ethanol, and the remaining pulp is sent to animal feed. Using Bacillus coagulans in a continuous fermentation, 2781.01 g of lactic acid was produced from 3916.91 g of sugars from hydrolyzed sugar beet pulp, with a maximum productivity of 18.06 g L-1h-1. Without interfering in the sugar production, ethanol, or lactic acid, it is also possible to produce pectin and phenolic compounds in the biorefinery. The lactic acid produced was purified by a bipolar membrane electrodialysis and the recovery reached 788.80 g/L with 98% w/w purity. © 2020 by the authors.
- ItemKaskadennutzung von Lignocellulose : LX-Verfahren trifft auf B. coagulans(Heidelberg : Spektrum, 2020) Schroedter, Linda; Streffer, Friedrich; Streffer, Katrin; Unger, Peter; Venus, JoachimInvestigating alternatives for petrobased substrates, lignocellulose is an interesting yet complex feedstock that offers various possibilities for the design of new and sustainable chemical routes. The novel energy-saving LX-pretreatment was combined with thermophilic Bacillus coagulans. By this, corn straw was used in an innovative cascade obtaining biogas, lignin as well as polymerisable L-(+)-lactic acid of over 99 percents optical purity. © 2020, Die Autoren.
- ItemTowards efficient production of highly optically pure d-lactic acid from lignocellulosic hydrolysates using newly isolated lactic acid bacteria(New York, NY [u.a.] : Elsevier, 2022) Alexandri, Maria; Hübner, Dennis; Schneider, Roland; Fröhling, Antje; Venus, JoachimThis study presents the production of D-lactic acid with high enantiomeric purity using lignocellulosic hydrolysates from newly isolated lactic acid bacterial (LAB) strains. Six strains, 4 heterofermentative and 2 homofermentative, were investigated for their ability to grow and produce lactic acid on sugar beet pulp (SBP) hydrolysates, containing a mixture of hexose and pentose sugars. Among the strains tested, three were isolates designated as A250, A257 and A15, all of which belonged to the genus Leuconostoc. Only strain A250 could be reliably identified as Leuconostoc pseudomesenteroides based on cluster analysis of Maldi-ToF spectra. All strains produced D-lactic acid in the presence of SBP hydrolysates, but with varying optical purities. The homofermentative strains achieved higher D-lactic acid optical purities, but without assimilating the pentose sugars. Co-cultivation of the homofermentative strain Lactobacillus coryniformis subsp. torquens DSM 20005 together with the heterofermentative isolate A250 led to the production of 21.7 g/L D-lactic acid with 99.3 % optical purity. This strategy enabled the complete sugar utilization of the substrate. Nanofiltration of the SBP hydrolysate enhanced the enantiomeric purity of the D-lactic acid produced from the isolates A250 and A15 by about 5 %. The highest D-lactic acid concentration (40 g/L) was achieved in fed-batch cultures of A250 isolate with nanofiltered SBP, where optical purity was 99.4 %. The results of this study underline the feasibility of a novel isolate as an efficient D-lactic acid producer using lignocellulosic hydrolysates.
- ItemRelevance of interactions between starch-based coatings and plum fruit surfaces: A physical-chemical analysis(Basel : MDPI AG, 2019) Basiak, Ewelina; Geyer, Martin; Debeaufort, Frédéric; Lenart, Andrzej; Linke, ManfredIn order to extend the shelf life of the fruit, improve appearance, and to keep all nutrition properties of the plum from diminishing, edible coatings comprised of wheat starch and wheat starch–whey protein isolate (in ratio 80/20) were created. Stand-alone films were produced to assess properties which helped to understand the phenomena occurring on the surface level of coated plums. The properties of coatings based on starch are similar to starch coatings containing oil because the natural epicuticular wax layer of plums merges with coating materials. Adding oil doubled the contact angle value and the dispersive component of the surface tension. The workings of adhesion and cohesion, spreading coefficient, water absorption, water content, and solubility in water of the films decreased. Similar processes were observed on the fruits’ surface. In appearance, the coating process is similar to polishing the plum surface for removing crystalline wax. The color parameters of coated fruits did not significantly change. Newly formed bonds or interactions established between starch, whey proteins, water, glycerol, and oil are displayed by Fourier transform infrared (FTIR) analysis. This work revealed how the interactions between the epicuticular wax on the fruit’s surface and the hydrocolloid-based coatings affect the efficiency of the coatings. © 2019 by the authors. Licensee MDPI, Basel, Switzerland.