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- ItemSemSur: A Core Ontology for the Semantic Representation of Research Findings(Amsterdam [u.a.] : Elsevier, 2018) Fathalla, Said; Vahdati, Sahar; Auer, Sören; Lange, Christoph; Fensel, Anna; de Boer, Victor; Pellegrini, Tassilo; Kiesling, Elmar; Haslhofer, Bernhard; Hollink, Laura; Schindler, AlexanderThe way how research is communicated using text publications has not changed much over the past decades. We have the vision that ultimately researchers will work on a common structured knowledge base comprising comprehensive semantic and machine-comprehensible descriptions of their research, thus making research contributions more transparent and comparable. We present the SemSur ontology for semantically capturing the information commonly found in survey and review articles. SemSur is able to represent scientific results and to publish them in a comprehensive knowledge graph, which provides an efficient overview of a research field, and to compare research findings with related works in a structured way, thus saving researchers a significant amount of time and effort. The new release of SemSur covers more domains, defines better alignment with external ontologies and rules for eliciting implicit knowledge. We discuss possible applications and present an evaluation of our approach with the retrospective, exemplary semantification of a survey. We demonstrate the utility of the SemSur ontology to answer queries about the different research contributions covered by the survey. SemSur is currently used and maintained at OpenResearch.org.
- ItemClassifying multi-model wheat yield impact response surfaces showing sensitivity to temperature and precipitation change(Amsterdam [u.a.] : Elsevier, 2017) Fronzek, Stefan; Pirttioja, Nina; Carter, Timothy R.; Bindi, Marco; Hoffmann, Holger; Palosuo, Taru; Ruiz-Ramos, Margarita; Tao, Fulu; Trnka, Miroslav; Acutis, Marco; Asseng, Senthold; Baranowski, Piotr; Basso, Bruno; Bodin, Per; Buis, Samuel; Cammarano, Davide; Deligios, Paola; Destain, Marie-France; Dumont, Benjamin; Ewert, Frank; Ferrise, Roberto; François, Louis; Gaiser, Thomas; Hlavinka, Petr; Jacquemin, Ingrid; Kersebaum, Kurt Christian; Kollas, Chris; Krzyszczak, Jaromir; Lorite, Ignacio J.; Minet, Julien; Minguez, M. Ines; Montesino, Manuel; Moriondo, Marco; Müller, Christoph; Nendel, Claas; Öztürk, Isik; Perego, Alessia; RodrÃguez, Alfredo; Ruane, Alex C.; Ruget, Françoise; Sanna, Mattia; Semenov, Mikhail A.; Slawinski, Cezary; Stratonovitch, Pierre; Supit, Iwan; Waha, Katharina; Wang, Enli; Wu, Lianhai; Zhao, Zhigan; Rötter, Reimund P.Crop growth simulation models can differ greatly in their treatment of key processes and hence in their response to environmental conditions. Here, we used an ensemble of 26 process-based wheat models applied at sites across a European transect to compare their sensitivity to changes in temperature (−2 to +9°C) and precipitation (−50 to +50%). Model results were analysed by plotting them as impact response surfaces (IRSs), classifying the IRS patterns of individual model simulations, describing these classes and analysing factors that may explain the major differences in model responses. The model ensemble was used to simulate yields of winter and spring wheat at four sites in Finland, Germany and Spain. Results were plotted as IRSs that show changes in yields relative to the baseline with respect to temperature and precipitation. IRSs of 30-year means and selected extreme years were classified using two approaches describing their pattern. The expert diagnostic approach (EDA) combines two aspects of IRS patterns: location of the maximum yield (nine classes) and strength of the yield response with respect to climate (four classes), resulting in a total of 36 combined classes defined using criteria pre-specified by experts. The statistical diagnostic approach (SDA) groups IRSs by comparing their pattern and magnitude, without attempting to interpret these features. It applies a hierarchical clustering method, grouping response patterns using a distance metric that combines the spatial correlation and Euclidian distance between IRS pairs. The two approaches were used to investigate whether different patterns of yield response could be related to different properties of the crop models, specifically their genealogy, calibration and process description. Although no single model property across a large model ensemble was found to explain the integrated yield response to temperature and precipitation perturbations, the application of the EDA and SDA approaches revealed their capability to distinguish: (i) stronger yield responses to precipitation for winter wheat than spring wheat; (ii) differing strengths of response to climate changes for years with anomalous weather conditions compared to period-average conditions; (iii) the influence of site conditions on yield patterns; (iv) similarities in IRS patterns among models with related genealogy; (v) similarities in IRS patterns for models with simpler process descriptions of root growth and water uptake compared to those with more complex descriptions; and (vi) a closer correspondence of IRS patterns in models using partitioning schemes to represent yield formation than in those using a harvest index. Such results can inform future crop modelling studies that seek to exploit the diversity of multi-model ensembles, by distinguishing ensemble members that span a wide range of responses as well as those that display implausible behaviour or strong mutual similarities.
- ItemLivelihood and climate trade-offs in Kenyan peri-urban vegetable production(Amsterdam [u.a.] : Elsevier, 2017) Kurgat, Barnabas K.; Stöber, Silke; Mwonga, Samuel; Lotze-Campen, Hermann; Rosenstock, Todd S.Trade-offs between livelihood and environmental outcomes due to agricultural intensification in sub-Saharan Africa are uncertain. The present study measured yield, economic performance and nitrous oxide (N2O) emissions in African indigenous vegetable (AIV) production to investigate the optimal nutrient management strategies. In order to achieve this, an on-farm experiment with four treatments – (1) 40 kg N/ha diammonium phosphate (DAP), (2) 10 t/ha cattle manure, (3) 20 kg N/ha DAP and 5 t/ha cattle manure and (4) a no-N input control – was performed for two seasons. Yields and N2O emissions were directly measured with subsampling and static chambers/gas chromatography, respectively. Economic outcomes were estimated from semi-structured interviews (N = 12). Trade-offs were quantified by calculating N2O emissions intensity (N2OI) and N2O emissions economic intensity (N2OEI). The results indicate that, DAP alone resulted at least 14% greater yields, gross margin and returns to labour in absolute terms but had the highest emissions (p = 0.003). Productivity-climate trade-offs, expressed as N2OI, were statistically similar for DAP and mixed treatments. However, N2OEI was minimized under mixed management (p = 0.0004) while maintaining productivity and gross margins. We therefore conclude that soil fertility management strategies that mix inorganic and organic source present a pathway to sustainable intensification in AIV production. Future studies of GHG emissions in crop production need to consider not only productivity but economic performance when considering trade-offs.
- ItemTargeting malignant melanoma with physical plasmas(Amsterdam [u.a.] : Elsevier, 2018) Pasqual-Melo, Gabriella; Gandhirajan, Rajesh Kumar; Stoffels, Ingo; Bekeschus, SanderMelanoma is the deadliest form of cutaneous neoplasia. With a five-year survival rate of only 5–19%, metastatic melanoma presents severe challenges in clinical therapies. In addition, palliation is often problematic due to large numbers of fast growing metastasis. This calls for new therapeutic avenues targeting highly aggressive melanoma in palliative patients. One recently suggested innovative approach for eradication of topical tumor lesions is the application of cold physical plasma. This partially ionized gas emits a cocktail of reactive oxygen and nitrogen species (ROS/RNS). ROS/RNS have been shown to be a double-edged sword in fueling cancer growth at low doses but abrogating it at higher doses. The ROS/RNS output of plasma devices is tunable, and many studies have successfully decreased cancer cell growth in vitro and tumor burden in vivo. In general, increasing numbers of clinical trials suggest combination therapies to outperform monotherapies with regard to prognosis in patients. This review describes current challenges in melanoma treatment and highlights the concept of plasma therapy in experimental studies performed in melanoma research. Future perspectives are given that combine the usage of physical plasma with e.g. chemotherapy, immunotherapy, and ionizing radiation in melanoma medical oncology.
- ItemHuman health risk evaluation of a microwave-driven atmospheric plasma jet as medical device(Amsterdam [u.a.] : Elsevier, 2017) Lehmann, A.; Pietag, F.; Arnold, T.Purpose: The aim of this study was the characterisation of a microwave-driven atmospheric plasma jet (APJ) dedicated for medical applications. The scientific focus includes harmless sterilization of surfaces and therapeutic treatments in dentistry. Methodes: The plasma was investigated with respect to potential health risks for human beings, which could occur especially by the gas temperature, heat flow, patient leakage current, UV emission and ozone emission from the plasma jet, according to DIN SPEC 91315:2014-06 (General requirements for plasma sources in medicine) [1]. Results: The results of the experiments indicate a high potential of the plasma jet to be used as a medical device exhibiting low gas temperatures up to 34 °C. The calculated leakage currents are mostly below the 10 μA threshold. The limiting UV exposure duration for the APJ with a calculated maximum effective irradiance of 2.6 μW/cm2 is around 19 min, based on the exposure limits of the international commission on non-ionizing radiation protection guidelines (ICNIRP) [2]. A significant ozone concentration was observed mainly in the axial effluent gas flow. Ozone concentration strongly decreases with increasing distance from the plasma source exit nozzle. Conclusion: The investigated APJ exhibits physical properties that might not constitute health risks to humans, e.g. during treatment in dentistry. Thus, the APJ shows a high potential for application as a device in dental therapy.
- ItemAdvanced Electric Propulsion Diagnostic Tools at IOM(Amsterdam [u.a.] : Elsevier, 2017) Bundesmann, C.; Eichhorn, C.; Scholze, F.; Spemann, D.; Neumann, H.; Scortecci, F.; Leiter, H.J.; Holste, K.; Klar, P.J.; Bulit, A.; Dannenmayer, K.; Amo, J. Gonzalez delRecently, we have set up an Advanced Electric Propulsion Diagnostic (AEPD) platform [1], which allows for the in-situ measurement of a comprehensive set of thruster performance parameters. The platform utilizes a five-axis-movement system for precise positioning of the thruster with respect to the diagnostic heads. In the first setup (AEPD1) an energy-selective mass spectrometer (ESMS) and a miniaturized Faraday probe for ion beam characterization, a telemicroscope and a triangular laser head for measuring the erosion of mechanical parts, and a pyrometer for surface temperature measurements were integrated. The capabilities of the AEPD1 platform were demonstrated with two electric propulsion thrusters, a gridded ion thruster RIT 22 (Airbus Defence & Space, Germany, [13]) and a Hall effect thruster SPT 100D EM1 (EDB Fakel, Russia, [1], [4]), in two different vacuum facilities.
- ItemPlatelets are key in cold physical plasma-facilitated blood coagulation in mice(Amsterdam [u.a.] : Elsevier, 2017) Bekeschus, Sander; Brüggemeier, Janik; Hackbarth, Christine; Woedtke, Thomas von; Partecke, Lars-Ivo; van der Linde, JuliaPurpose: Surgical interventions inevitably lead to destruction of blood vessels. This is especially dangerous in anticoagulated patients. Electrocauterization is a frequently used technique to seal incised tissue. However, leading to a superficial layer of necrotic tissue, the treated area evolves a high vulnerability to contact, making it prone to detachment. As a result, dangerous postoperative bleeding may occur. Cold physical plasma was previously suggested as a pro-coagulant treatment method. It mainly acts by expelling a delicate mixture of oxidants. We therefore tested the suitability of an atmospheric pressure plasma jet (kINPen MED) as a new medical device for sufficient blood coagulation in a murine model of liver incision. Methods: Plasma treatment of murine blood ex vivo induced sufficient coagula. This effect did not affect any tested parameter of plasmatic coagulation cascade, suggesting the mechanism to be related to cellular coagulation. Indeed, isolated platelets were significantly activated following exposure to plasma, although this effect was less pronounced in whole blood. To analyze the biological effect of plasma-on blood coagulation in vivo, mice were anticoagulated (clopidogrel inhibiting cellular and rivaroxaban inhibiting plasmatic hemostasis) or received vehicle only. Afterwards, a partial resection of the left lateral liver lobe was performed. The quantification of the blood loss after liver incision followed by treatment with kINPen MED plasma or electrocauterization revealed a similar and significant hemostatic performance in native and rivaroxaban but not clopidogrel-treated animals compared to argon gas-treated controls. In contrast to electrocauterization, kINPen MED plasma treatment did not cause necrotic cell layers. Conclusion: Our results propose a prime importance of platelets in cold physical plasma-mediated hemostasis and suggest a clinical benefit of kINPen MED plasma treatment as coagulation device in liver surgery.
- ItemPotentiating anti-tumor immunity with physical plasma(Amsterdam [u.a.] : Elsevier, 2018) Bekeschus, Sander; Clemen, Ramona; Metelmann, Hans-RobertThe age of checkpoint blockage emphasizes the importance of adaptive antitumor immune responses. This arm of immune defense is key in recognizing molecules via specific receptors to distinguish between self and foreign or mutated structures. Antigen-specific T-cells identify non-self epitopes, tumor-associated antigens, or neoepitopes on tumors to carry out attacks on malignant cells. Although tumor cells are immunogenic by nature, they have developed strategies to evade an immune response that would otherwise facilitate their clearance. Several steps in antitumor immunity utilize the toxic and signaling properties of reactive oxygen and nitrogen species (ROS/RNS). Cold physical plasmas are potent generators of such ROS/RNS and are demonstrated to have profound antitumor activity in vitro and in vivo. Here we discuss recent evidence and concepts on how plasmas may boost immunity against pathological cells. Specifically, plasma treatment may enhance the immunogenicity of tumor cells by induction of the immunogenic cancer cell death (ICD) and redox regulation of the antigen-presenting machinery. These aspects provide a rationale for localized plasma-based onco-therapies enhancing systemic antitumor immunity, which eventually may target distant tumor metastasis in cancer patients in a T-cell dependent fashion.
- ItemCellulose-carbon nanotube composite aerogels as novel thermoelectric materials(Amsterdam [u.a.] : Elsevier, 2018) Gnanaseelan, Minoj; Chen, Yian; Luo, Jinji; Krause, Beate; Pionteck, Jürgen; Pötschke, Petra; Qu, HaisongThermoelectric materials based on cellulose/carbon nanotube (CNT) nanocomposites have been developed by a facile approach and the effects of amount (2–10 wt%) and types of CNTs (single-walled carbon nanotubes (SWCNTs) and multi-walled carbon nanotubes (MWCNTs)) on the morphology (films and aerogels) and the thermoelectric properties of the nanocomposites have been investigated. Composite films based on SWCNTs showed significantly higher electrical conductivity (5 S/cm at 10 wt%) and Seebeck coefficient (47.2 μV/K at 10 wt%) compared to those based on MWCNTs (0.9 S/cm and 11 μV/K, respectively). Lyophilization, leading to development of aerogels with sub-micron sized pores, decreased the electrical conductivity for both types by one order of magnitude, but did not affect the Seebeck coefficient of MWCNT based nanocomposites. For SWCNT containing aerogels, higher Seebeck coefficients than for films were measured at 3 and 4 wt% but significantly lower values at higher loadings. CNT addition increased the thermal conductivity from 0.06 to 0.12 W/(m∙K) in the films, whereas the lyophilization significantly reduced it towards values between 0.01 and 0.09 W/(m∙K) for the aerogels. The maximum Seebeck coefficient, power factor, and ZT observed in this study are 49 μV/K for aerogels with 3 wt% SWCNTs, 1.1 μW/(m∙K2) for composite films with 10 wt% SWCNTs, and 7.4 × 10−4 for films with 8 wt% SWCNTs, respectively.
- ItemDevelopment of electrically conductive microstructures based on polymer/CNT nanocomposites via two-photon polymerization(Amsterdam [u.a.] : Elsevier, 2017) Staudinger, U.; Zyla, G.; Krause, Beate; Janke, A.; Fischer, D.; Esen, C.; Voit, B.; Ostendorf, A.Femtosecond laser-induced two-photon polymerization (2PP) of carbon nanofiller doped polymers was utilized to produce electrically conductive microstructures, which are expected to be applicable as microelectronic components or micro-electromechanical systems in sensors. The nanocomposites were processed by compounding an inorganic-organic hybrid material with two different types (short and long) of single walled carbon nanotubes (SWCNTs). Different SWCNT contents were dispersed in the polymer by sonication to adjust the electrical conductivity of the nanocomposites. Low surface resistivity values of ~ 4.6 × 105 Ω/sq. could be measured for coated reference films with a thickness of 30 μm having an exceptionally low SWCNT content of 0.01 wt% of the long type of SWCNTs. In contrast, a higher minimum resistivity of 1.5 × 106 Ω/sq. was exhibited for composites with a higher content, 2 wt%, of short SWCNTs. The structural quality of the microstructures processed by 2PP was mainly influenced by the dispersion quality of the SWCNTs. To characterize the electrical conductivity, conductive atomic force microscopy was applied for the first time. In microstructures with 0.05 wt% of the long type of SWCNTs, a contact current could be detected over a wide range of the measured area visualizing the electrical conductive CNT network, which has not been reported before.