Search Results
Increasing the spatial resolution of cloud property retrievals from Meteosat SEVIRI by use of its high-resolution visible channel: Evaluation of candidate approaches with MODIS observations
This study presents and evaluates several candidate approaches for downscaling observations from the Spinning Enhanced Visible and Infrared Imager (SEVIRI) in order to increase the horizontal resolution of subsequent cloud optical thickness (τ) and effective droplet radius (reff) retrievals from the native ≈ 3km×3km spatial resolution of the narrowband channels to ≈ 1km×1km. These methods make use of SEVIRI's coincident broadband high-resolution visible (HRV) channel. For four example cloud fields, the reliability of each downscaling algorithm is evaluated by means of collocated 1km×1km MODIS radiances, which are reprojected to the horizontal grid of the HRV channel and serve as reference for the evaluation. By using these radiances, smoothed with the modulation transfer function of the native SEVIRI channels, as retrieval input, the accuracy at the SEVIRI standard resolution can be evaluated and an objective comparison of the accuracy of the different downscaling algorithms can be made. For the example scenes considered in this study, it is shown that neglecting high-frequency variations below the SEVIRI standard resolution results in significant random absolute deviations of the retrieved τ and reff of up to ≈ 14 and ≈ 6μm, respectively, as well as biases. By error propagation, this also negatively impacts the reliability of the subsequent calculation of liquid water path (WL) and cloud droplet number concentration (ND), which exhibit deviations of up to ≈ 89gm-2 and ≈ 177cm-3, respectively. For τ , these deviations can be almost completely mitigated by the use of the HRV channel as a physical constraint and by applying most of the presented downscaling schemes. Uncertainties in retrieved reff at the native SEVIRI resolution are smaller, and the improvements from downscaling the observations are less obvious than for τ. Nonetheless, the right choice of downscaling scheme yields noticeable improvements in the retrieved reff. Furthermore, the improved reliability in retrieved cloud products results in significantly reduced uncertainties in derived WL and ND. In particular, one downscaling approach provides clear improvements for all cloud products compared to those obtained from SEVIRI's standard resolution and is recommended for future downscaling endeavors. This work advances efforts to mitigate impacts of scale mismatches among channels of multiresolution instruments on cloud retrievals. © Author(s) 2020.
Simulating second-generation herbaceous bioenergy crop yield using the global hydrological model H08 (v.bio1)
Large-scale deployment of bioenergy plantations would have adverse effects on water resources. There is an increasing need to ensure the appropriate inclusion of the bioenergy crops in global hydrological models. Here, through parameter calibration and algorithm improvement, we enhanced the global hydrological model H08 to simulate the bioenergy yield from two dedicated herbaceous bioenergy crops: Miscanthus and switchgrass. Site-specific evaluations showed that the enhanced model had the ability to simulate yield for both Miscanthus and switchgrass, with the calibrated yields being well within the ranges of the observed yield. Independent country-specific evaluations further confirmed the performance of the H08 (v.bio1). Using this improved model, we found that unconstrained irrigation more than doubled the yield under rainfed condition, but reduced the water use efficiency (WUE) by 32 % globally. With irrigation, the yield in dry climate zones can exceed the rainfed yields in tropical climate zones. Nevertheless, due to the low water consumption in tropical areas, the highest WUE was found in tropical climate zones, regardless of whether the crop was irrigated. Our enhanced model provides a new tool for the future assessment of bioenergy–water tradeoffs.
Human displacements from Tropical Cyclone Idai attributable to climate change
Extreme weather events, such as tropical cyclones, often trigger population displacement. The frequency and intensity of tropical cyclones are affected by anthropogenic climate change. However, the effect of historical climate change on displacement risk has so far not been quantified. Here, we show how displacement can be partially attributed to climate change using the example of the 2019 Tropical Cyclone Idai in Mozambique. We estimate the population exposed to high water levels following Idai's landfall using a combination of a 2D hydrodynamical storm surge model and a flood depth estimation algorithm to determine inland flood depths from remote sensing images, factual (climate change) and counterfactual (no climate change) mean sea level, and maximum wind speed conditions. Our main estimates indicate that climate change has increased displacement risk from this event by approximately 12 600-14 900 additional displaced persons, corresponding to about 2.7 % to 3.2 % of the observed displacements. The isolated effect of wind speed intensification is double that of sea level rise. These results are subject to important uncertainties related to both data and modeling assumptions, and we perform multiple sensitivity experiments to assess the range of uncertainty where possible. Besides highlighting the significant effects on humanitarian conditions already imparted by climate change, our study provides a blueprint for event-based displacement attribution.
Optimized High-Content Imaging Screening Quantifying Micronuclei Formation in Polymer-Treated HaCaT Keratinocytes
Research on nano- and micro-plastic particles (NMPPs) suggests their potential threat to human health. Some studies have even suggested genotoxic effects of NMPP exposure, such as micronuclei (MN) formation, while others found the opposite. To clarify the ability of NMPP to induce MN formation, we used non-malignant HaCaT keratinocytes and exposed these to a variety of polystyrene (PS) and poly methyl methacrylate (PMMA) particle types at different concentrations and three different sizes. Investigations were performed following acute (one day) and chronic exposure (five weeks) against cytotoxic (amino-modified NMPPs) and genotoxic (methyl methanesulfonate, MMS) positive controls. An optimized high-content imaging workflow was established strictly according to OECD guidelines for analysis. Algorithm-based object segmentation and MN identification led to computer-driven, unsupervised quantitative image analysis results on MN frequencies among the different conditions and thousands of cells per condition. This could only be realized using accutase, allowing for partial cell detachment for optimal identification of bi-nucleated cells. Cytotoxic amino-modified particles were not genotoxic; MMS was both. During acute and long-term studies, PS and PMMA particles were neither toxic nor increased MN formation, except for 1000 nm PS particles at the highest concentration of unphysiological 100 µg/mL. Interestingly, ROS formation was significantly decreased in this condition. Hence, most non-charged polymer particles were neither toxic nor genotoxic, while aminated particles were toxic but not genotoxic. Altogether, we present an optimized quantitative imaging workflow applied to a timely research question in environmental toxicity.
Fiber-based SORS-SERDS system and chemometrics for the diagnostics and therapy monitoring of psoriasis inflammatory disease in vivo
Psoriasis is considered a widespread dermatological disease that can strongly affect the quality of life. Currently, the treatment is continued until the skin surface appears clinically healed. However, lesions appearing normal may contain modifications in deeper layers. To terminate the treatment too early can highly increase the risk of relapses. Therefore, techniques are needed for a better knowledge of the treatment process, especially to detect the lesion modifications in deeper layers. In this study, we developed a fiber-based SORS-SERDS system in combination with machine learning algorithms to non-invasively determine the treatment efficiency of psoriasis. The system was designed to acquire Raman spectra from three different depths into the skin, which provide rich information about the skin modifications in deeper layers. This way, it is expected to prevent the occurrence of relapses in case of a too short treatment. The method was verified with a study of 24 patients upon their two visits: the data is acquired at the beginning of a standard treatment (visit 1) and four months afterwards (visit 2). A mean sensitivity of ≥85% was achieved to distinguish psoriasis from normal skin at visit 1. At visit 2, where the patients were healed according to the clinical appearance, the mean sensitivity was ≈65%.
Evolutionary design of explainable algorithms for biomedical image segmentation
An unresolved issue in contemporary biomedicine is the overwhelming number and diversity of complex images that require annotation, analysis and interpretation. Recent advances in Deep Learning have revolutionized the field of computer vision, creating algorithms that compete with human experts in image segmentation tasks. However, these frameworks require large human-annotated datasets for training and the resulting “black box” models are difficult to interpret. In this study, we introduce Kartezio, a modular Cartesian Genetic Programming-based computational strategy that generates fully transparent and easily interpretable image processing pipelines by iteratively assembling and parameterizing computer vision functions. The pipelines thus generated exhibit comparable precision to state-of-the-art Deep Learning approaches on instance segmentation tasks, while requiring drastically smaller training datasets. This Few-Shot Learning method confers tremendous flexibility, speed, and functionality to this approach. We then deploy Kartezio to solve a series of semantic and instance segmentation problems, and demonstrate its utility across diverse images ranging from multiplexed tissue histopathology images to high resolution microscopy images. While the flexibility, robustness and practical utility of Kartezio make this fully explicable evolutionary designer a potential game-changer in the field of biomedical image processing, Kartezio remains complementary and potentially auxiliary to mainstream Deep Learning approaches.
Cloud top heights and aerosol layer properties from EarthCARE lidar observations: The A-CTH and A-ALD products
The high-spectral-resolution Atmospheric Lidar (ATLID) on the Earth Cloud, Aerosol and Radiation Explorer (EarthCARE) provides vertically resolved information on aerosols and clouds with unprecedented accuracy. Together with the Cloud Profiling Radar (CPR), the Multi-Spectral Imager (MSI), and the Broad-Band Radiometer (BBR) on the same platform, it allows for a new synergistic view on atmospheric processes related to the interaction of aerosols, clouds, precipitation, and radiation at the global scale. This paper describes the algorithms for the determination of cloud top height and aerosol layer information from ATLID Level 1b (L1b) and Level 2a (L2a) input data. The ATLID L2a Cloud Top Height (A-CTH) and Aerosol Layer Descriptor (A-ALD) products are developed to ensure the provision of atmospheric layer products in continuation of the heritage from the Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO). Moreover, the products serve as input for synergistic algorithms that make use of data from ATLID and MSI. Therefore, the products are provided on the EarthCARE joint standard grid (JSG). A wavelet covariance transform (WCT) method with flexible thresholds is applied to determine layer boundaries from the ATLID Mie co-polar signal. Strong features detected with a horizontal resolution of 1 JSG pixel (approximately 1ĝ€¯km) or 11 JSG pixels are classified as thick or thin clouds, respectively. The top height of the uppermost cloud layer together with information on cloud layering are stored in the A-CTH product for further use in the generation of the ATLID-MSI Cloud Top Height (AM-CTH) synergy product. Aerosol layers are detected as weaker features at a resolution of 11 JSG pixels. Layer-mean optical properties are calculated from the ATLID L2a Extinction, Backscatter and Depolarization (A-EBD) product and stored in the A-ALD product, which also contains the aerosol optical thickness (AOT) of each layer, the stratospheric AOT, and the AOT of the entire atmospheric column. The latter parameter is used to produce the synergistic ATLID-MSI Aerosol Column Descriptor (AM-ACD) later in the processing chain. Several quality criteria are applied in the generation of A-CTH and A-ALD, and respective information is stored in the products. The functionality and performance of the algorithms are demonstrated by applying them to common EarthCARE test scenes. Conclusions are drawn for the application to real-world data and the validation of the products after the launch of EarthCARE.
Understanding aerosol microphysical properties from 10 years of data collected at Cabo Verde based on an unsupervised machine learning classification
The Cape Verde Atmospheric Observatory (CVAO), which is influenced by both marine and desert dust air masses, has been used for long-term measurements of different properties of the atmospheric aerosol from 2008 to 2017. These properties include particle number size distributions (PNSD), light-absorbing carbon (LAC) and concentrations of cloud condensation nuclei (CCN) together with their hygroscopicity. Here we summarize the results obtained for these properties and use an unsupervised machine learning algorithm for the classification of aerosol types. Five types of aerosols, i.e., marine, freshly formed, mixture, moderate dust and heavy dust, were classified. Air masses during marine periods are from the Atlantic Ocean and during dust periods are from the Sahara Desert. Heavy dust was more frequently present during wintertime, whereas the clean marine periods were more frequently present during springtime. It was observed that during the dust periods CCN number concentrations at a supersaturation of 0.30g% were roughly 2.5 times higher than during marine periods, but the hygroscopicity (κ) of particles in the size range from g1/4g30 to g1/4g175gnm during marine and dust periods were comparable. The long-term data presented here, together with the aerosol classification, can be used as a basis to improve our understanding of annual cycles of the atmospheric aerosol in the eastern tropical Atlantic Ocean and on aerosol-cloud interactions and it can be used as a basis for driving, evaluating and constraining atmospheric model simulations.
Computational design and optimization of electro-physiological sensors
Electro-physiological sensing devices are becoming increasingly common in diverse applications. However, designing such sensors in compact form factors and for high-quality signal acquisition is a challenging task even for experts, is typically done using heuristics, and requires extensive training. Our work proposes a computational approach for designing multi-modal electro-physiological sensors. By employing an optimization-based approach alongside an integrated predictive model for multiple modalities, compact sensors can be created which offer an optimal trade-off between high signal quality and small device size. The task is assisted by a graphical tool that allows to easily specify design preferences and to visually analyze the generated designs in real-time, enabling designer-in-the-loop optimization. Experimental results show high quantitative agreement between the prediction of the optimizer and experimentally collected physiological data. They demonstrate that generated designs can achieve an optimal balance between the size of the sensor and its signal acquisition capability, outperforming expert generated solutions.
Cloud mask algorithm from the EarthCARE Multi-Spectral Imager: the M-CM products
The EarthCARE (Earth Clouds, Aerosols and Radiation Explorer) satellite mission will provide new insights into aerosol-cloud-radiation interactions by means of synergistic observations of the Earth's atmosphere from a collection of active and passive remote sensing instruments, flying on a single satellite platform. The Multi-Spectral Imager (MSI) will provide visible and infrared images in the cross-track direction with a 150km swath and a pixel sampling at 500m. The suite of MSI cloud algorithms will deliver cloud macro- and microphysical properties complementary to the vertical profiles measured from the Atmospheric Lidar (ATLID) and the Cloud Profiling Radar (CPR) instruments. This paper provides an overview of the MSI cloud mask algorithm (M-CM) being developed to derive the cloud flag, cloud phase and cloud type products, which are essential inputs to downstream EarthCARE algorithms providing cloud optical and physical properties (M-COP) and aerosol optical properties (M-AOT). The MSI cloud mask algorithm has been applied to simulated test data from the EarthCARE end-to-end simulator and satellite data from the Moderate Resolution Imaging Spectroradiometer (MODIS) as well as from the Spinning Enhanced Visible InfraRed Imager (SEVIRI). Verification of the MSI cloud mask algorithm to the simulated test data and the official cloud products from SEVIRI and MODIS demonstrates a good performance of the algorithm. Some discrepancies are found, however, for the detection of thin cirrus clouds over bright surfaces like desert or snow. This will be improved by tuning of the thresholds once real observations are available.