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Ring-Closure Mechanisms Mediated by Laccase to Synthesize Phenothiazines, Phenoxazines, and Phenazines

2020, Hahn, Veronika, Mikolasch, Annett, Weitemeyer, Josephine, Petters, Sebastian, Davids, Timo, Lalk, Michael, Lackmann, Jan-Wilm, Schauer, Frieder

The green and environmentally friendly synthesis of highly valuable organic substances is one possibility for the utilization of laccases (EC 1.10.3.2). As reactants for the herein described syntheses, different o-substituted arylamines or arylthiols and 2,5-dihydroxybenzoic acid and its derivatives were used. In this way, the formation of phenothiazines, phenoxazines, and phenazines was achieved in aqueous solution mediated by the laccase of Pycnoporus cinnabarinus in the presence of oxygen. Two types of phenothiazines (3-hydroxy- and 3-oxo-phenothiazines) formed in one reaction assay were described for the first time. The cyclization reactions yielded C–N, C–S, or C–O bonds. The syntheses were investigated with regard to the substitution pattern of the reaction partners. Differences in C–S and C–N bond formations without cyclization are discussed.

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Conformations of a Long Polymer in a Melt of Shorter Chains: Generalizations of the Flory Theorem

2015, Lang, Michael, Rubinstein, Michael, Sommer, Jens-Uwe

Large-scale simulations of the swelling of a long N-mer in a melt of chemically identical P-mers are used to investigate a discrepancy between theory and experiments. Classical theory predicts an increase of probe chain size R ∼ P–0.18 with decreasing degree of polymerization P of melt chains in the range of 1 < P < N1/2. However, both experiment and simulation data are more consistent with an apparently slower swelling R ∼ P–0.1 over a wider range of melt degrees of polymerization. This anomaly is explained by taking into account the recently discovered long-range bond correlations in polymer melts and corrections to excluded volume. We generalize the Flory theorem and demonstrate that it is in excellent agreement with experiments and simulations.

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EVENTSKG: A 5-Star Dataset of Top-Ranked Events in Eight Computer Science Communities

2019, Fathalla, Said, Lange, Christoph, Auer, Sören, Hitzler, Pascal, Fernández, Miriam, Janowicz, Krzysztof, Zaveri, Amrapali, Gray, Alasdair J.G., Lopez, Vanessa, Haller, Armin, Hammar, Karl

Metadata of scientific events has become increasingly available on the Web, albeit often as raw data in various formats, disregarding its semantics and interlinking relations. This leads to restricting the usability of this data for, e.g., subsequent analyses and reasoning. Therefore, there is a pressing need to represent this data in a semantic representation, i.e., Linked Data. We present the new release of the EVENTSKG dataset, comprising comprehensive semantic descriptions of scientific events of eight computer science communities. Currently, EVENTSKG is a 5-star dataset containing metadata of 73 top-ranked event series (almost 2,000 events) established over the last five decades. The new release is a Linked Open Dataset adhering to an updated version of the Scientific Events Ontology, a reference ontology for event metadata representation, leading to richer and cleaner data. To facilitate the maintenance of EVENTSKG and to ensure its sustainability, EVENTSKG is coupled with a Java API that enables users to add/update events metadata without going into the details of the representation of the dataset. We shed light on events characteristics by analyzing EVENTSKG data, which provides a flexible means for customization in order to better understand the characteristics of renowned CS events.

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Die Rolle der ORCID iD in der Wissenschaftskommunikation: Der Beitrag des ORCID-Deutschland-Konsortiums und das ORCID-DE-Projekt

2019, Dreyer, Britta, Hagemann-Wilholt, Stephanie, Vierkant, Paul, Strecker, Dorothea, Glagla-Dietz, Stephanie, Summann, Friedrich, Pampel, Heinz, Burger, Marleen

ORCID’s services such as the unambiguous linking of researchers and their research output form the basis of modern scholarly communication. The ORCID Germany Consortium offers a reduced ORCID premium membership fee and supports its members during ORCID integration. Services include a dialogue platform that provides German-language information and additional support services. Another major success factor is an all-encompassing communication strategy: members of the ORCID implementation can resort to established organizational communication channels. Together and with the support of the ORCID DE project they contribute significantly to the successful distribution of ORCID in Germany.

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Crystal structure of diethyl (E)-2-[(benzofuran-2-yl)methylidene]succinate

2015, Schirmer, Marie-Luis, Spannenberg, Anke, Werner, Thomas

The title compound, C17H18O5, was synthesized by a base-free catalytic Wittig reaction. The mol­ecule consists of a diethyl itaconate unit, which is connected via the C=C double bond to a benzo­furan moiety. The benzo­furan ring system (r.m.s. deviation = 0.007 Å) forms dihedral angles of 79.58 (4) and 12.12 (10)° with the mean planes through the cis and trans eth­oxy­carbonyl groups, respectively. An intra­molecular C-H...O hydrogen bond involving the O atom of the benzo­furan moiety is observed. In the crystal, mol­ecules are linked into ribbons running parallel to the b axis by C-H...O hydrogen bonds.

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Mineral dust in Central Asia: Combining lidar and other measurements during the Central Asian dust experiment (CADEX)

2018, Althausen, Dietrich, Hofer, Julian, Abdullaev, Sabur, Makhmudov, Abduvosit, Baars, Holger, Engelmann, Ronny, Wadinga Fomba, Khanneh, Müller, Konrad, Schettler, Georg, Klüser, Lars, Kandler, Konrad, Nicolae, D., Makoto, A., Vassilis, A., Balis, D., Behrendt, A., Comeron, A., Gibert, F., Landulfo, E., McCormick, M.P., Senff, C., Veselovskii, I., Wandinger, U.

Mineral dust needs to be characterized comprehensively since it contributes to the climate change in Tajikistan / Central Asia. Lidar results from the measurements of mineral dust during CADEX are compared with results of sun photometer measurements, satellite-based measurements, and chemical analysis of ground samples. Although the dust is often advected from far-range sources, it impacts on the local conditions considerably.

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Sperm Micromotors for Cargo Delivery through Flowing Blood

2020, Xu, Haifeng, Medina-Sánchez, Mariana, Maitz, Manfred F., Werner, Carsten, Schmidt, Oliver G.

Micromotors are recognized as promising candidates for untethered micromanipulation and targeted cargo delivery in complex biological environments. However, their feasibility in the circulatory system has been limited due to the low thrust force exhibited by many of the reported synthetic micromotors, which is not sufficient to overcome the high flow and complex composition of blood. Here we present a hybrid sperm micromotor that can actively swim against flowing blood (continuous and pulsatile) and perform the function of heparin cargo delivery. In this biohybrid system, the sperm flagellum provides a high propulsion force while the synthetic microstructure serves for magnetic guidance and cargo transport. Moreover, single sperm micromotors can assemble into a train-like carrier after magnetization, allowing the transport of multiple sperm or medical cargoes to the area of interest, serving as potential anticoagulant agents to treat blood clots or other diseases in the circulatory system.

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Structure-property relationships in nanoporous metallic glasses

2016, Şopu, D., Soyarslan, C., Sarac, B., Bargmann, S., Stoica, M., Eckert, J.

We investigate the influence of various critical structural aspects such as pore density, distribution, size and number on the deformation behavior of nanoporous Cu64 Zr36 glass. By using molecular dynamics and finite element simulations an effective strategy to control the strain localization in nanoporous heterostructures is provided. Depending on the pore distribution in the heterostructure, upon tensile loading the nanoporous glass showed a clear transition from a catastrophic fracture to localized deformation in one dominant shear band, and ultimately to homogeneous plastic flow mediated by a pattern of multiple shear bands. The change in the fracture mechanism from a shear band slip to necking-like homogeneous flow is quantitative interpreted by calculating the critical shear band length. Finally, we identify the most effective heterostructure with enhanced ductility as compared to the monolithic bulk metallic glass. The heterostructure with a fraction of pores of about 3% distributed in such a way that the pores do not align along the maximum shear stress direction shows higher plasticity while retaining almost the same strength as the monolithic glass. Our results provide clear evidence that the mechanical properties of nanoporous glassy materials can be tailored by carefully controlling the design parameters.

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Fast, Label-Free Tracking of Single Viruses and Weakly Scattering Nanoparticles in a Nanofluidic Optical Fiber

2015, Faez, Sanli, Lahini, Yoav, Weidlich, Stefan, Garmann, Rees F., Wondraczek, Katrin, Zeisberger, Matthias, Schmidt, Markus A., Orrit, Michel, Manoharan, Vinothan N.

High-speed tracking of single particles is a gateway to understanding physical, chemical, and biological processes at the nanoscale. It is also a major experimental challenge, particularly for small, nanometer-scale particles. Although methods such as confocal or fluorescence microscopy offer both high spatial resolution and high signal-to-background ratios, the fluorescence emission lifetime limits the measurement speed, while photobleaching and thermal diffusion limit the duration of measurements. Here we present a tracking method based on elastic light scattering that enables long-duration measurements of nanoparticle dynamics at rates of thousands of frames per second. We contain the particles within a single-mode silica fiber having a subwavelength, nanofluidic channel and illuminate them using the fiber's strongly confined optical mode. The diffusing particles in this cylindrical geometry are continuously illuminated inside the collection focal plane. We show that the method can track unlabeled dielectric particles as small as 20 nm as well as individual cowpea chlorotic mottle virus (CCMV) virions-26 nm in size and 4.6 megadaltons in mass-at rates of over 3 kHz for durations of tens of seconds. Our setup is easily incorporated into common optical microscopes and extends their detection range to nanometer-scale particles and macromolecules. The ease-of-use and performance of this technique support its potential for widespread applications in medical diagnostics and micro total analysis systems.

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Seeded Growth Synthesis of Gold Nanotriangles: Size Control, SAXS Analysis, and SERS Performance

2018, Kuttner, Christian, Mayer, Martin, Dulle, Martin, Moscoso, Ana, López-Romero, Juan Manuel, Förster, Stephan, Fery, Andreas, Pérez-Juste, Jorge, Contreras-Cáceres, Rafael

We studied the controlled growth of triangular prismatic Au nanoparticles with different beveled sides for surface-enhanced Raman spectroscopy (SERS) applications. First, in a seedless synthesis using 3-butenoic acid (3BA) and benzyldimethylammonium chloride (BDAC), gold nanotriangles (AuNTs) were synthesized in a mixture with gold nanooctahedra (AuNOCs) and separated by depletion-induced flocculation. Here, the influence of temperature, pH, and reducing agent on the reaction kinetics was initially investigated by UV–vis and correlated to the size and yield of AuNT seeds. In a second step, the AuNT size was increased by seed-mediated overgrowth with Au. We show for the first time that preformed 3BA-synthesized AuNT seeds can be overgrown up to a final edge length of 175 nm and a thickness of 80 nm while maintaining their triangular shape and tip sharpness. The NT morphology, including edge length, thickness, and tip rounding, was precisely characterized in dispersion by small-angle X-ray scattering and in dry state by transmission electron microscopy and field-emission scanning electron microscopy. For sensor purposes, we studied the size-dependent SERS performance of AuNTs yielding analytical enhancement factors between 0.9 × 104 and 5.6 × 104 and nanomolar limit of detection (10–8–10–9 M) for 4-mercaptobenzoic acid and BDAC. These results confirm that the 3BA approach allows the fabrication of AuNTs in a whole range of sizes maintaining the NT morphology. This enables tailoring of localized surface plasmon resonances between 590 and 740 nm, even in the near-infrared window of a biological tissue, for use as colloidal SERS sensing agents or for optoelectronic applications.