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- ItemComplement activation by carbon nanotubes and its influence on the phagocytosis and cytokine response by macrophages(Amsterdam [u.a.] : Elsevier, 2014) Pondman, K.M.; Sobik, M.; Nayak, A.; Tsolaki, A.G.; Jäkel, A.; Flahaut, E.; Hampel, S.; ten Haken, B.; Sim, R.B.; Kishore, U.Carbon nanotubes (CNTs) have promised a range of applications in biomedicine. Although influenced by the dispersants used, CNTs are recognized by the innate immune system, predominantly by the classical pathway of the complement system. Here, we confirm that complement activation by the CNT used continues up to C3 and C5, indicating that the entire complement system is activated including the formation of membrane-attack complexes. Using recombinant forms of the globular regions of human C1q (gC1q) as inhibitors of CNT-mediated classical pathway activation, we show that C1q, the first recognition subcomponent of the classical pathway, binds CNTs via the gC1q domain. Complement opsonisation of CNTs significantly enhances their uptake by U937 cells, with concomitant downregulation of pro-inflammatory cytokines and up-regulation of anti-inflammatory cytokines in both U937 cells and human monocytes. We propose that CNT-mediated complement activation may cause recruitment of cellular infiltration, followed by phagocytosis without inducing a pro-inflammatory immune response. From the Clinical Editor: This study highlights the importance of the complement system in response to carbon nanontube administration, suggesting that the ensuing complement activation may cause recruitment of cellular infiltration, followed by phagocytosis without inducing a pro-inflammatory immune response.
- ItemOn Indecomposable Polyhedra and the Number of Steiner Points(Amsterdam [u.a.] : Elsevier, 2015) Goerigk, Nadja; Si, HangThe existence of indecomposable polyhedra, that is, the interior of every such polyhedron cannot be decomposed into a set of tetrahedra whose vertices are all of the given polyhedron, is well-known. However, the geometry and combinatorial structure of such polyhedra are much less studied. In this article, we investigate the structure of some well-known examples, the so-called Schönhardt polyhedron [10] and the Bagemihl's generalization of it [1], which will be called Bagemihl's polyhedra. We provide a construction of an additional point, so-called Steiner point, which can be used to decompose the Schönhardt and the Bagemihl's polyhedra. We then provide a construction of a larger class of three-dimensional indecomposable polyhedra which often appear in grid generation problems. We show that such polyhedra have the same combinatorial structure as the Schönhardt's and Bagemihl's polyhedra, but they may need more than one Steiner point to be decomposed. Given such a polyhedron with n ≥ 6 vertices, we show that it can be decomposed by adding at most interior Steiner points. We also show that this number is optimal in theworst case.
- ItemPrediction of the biogas production using GA and ACO input features selection method for ANN model(Amsterdam [u.a.] : Elsevier, 2019) Beltramo, Tanja; Klocke, Michael; Hitzmann, BerndThis paper presents a fast and reliable approach to analyze the biogas production process with respect to the biogas production rate. The experimental data used for the developed models included 15 process variables measured at an agricultural biogas plant in Germany. In this context, the concentration of volatile fatty acids, total solids, volatile solids acid detergent fibre, acid detergent lignin, neutral detergent fibre, ammonium nitrogen, hydraulic retention time, and organic loading rate were used. Artificial neural networks (ANN) were established to predict the biogas production rate. An ant colony optimization and genetic algorithms were implemented to perform the variable selection. They identified the significant process variables, reduced the model dimension and improved the prediction capacity of the ANN models. The best prediction of the biogas production rate was obtained with an error of prediction of 6.24% and a coefficient of determination of R2 = 0.9.
- ItemAmyloids: From molecular structure to mechanical properties(Amsterdam [u.a.] : Elsevier, 2013) Schleeger, M.; Vandenakker, C.C.; Deckert-Gaudig, T.; Deckert, V.; Velikov, K.P.; Koenderink, G.; Bonn, M.Many proteins of diverse sequence, structure and function self-assemble into morphologically similar fibrillar aggregates known as amyloids. Amyloids are remarkable polymers in several respects. First of all, amyloids can be formed from proteins with very different amino acid sequences; the common denominator is that the individual proteins constituting the amyloid fold predominantly into a β-sheet structure. Secondly, the formation of the fibril occurs through non-covalent interactions between primarily the β-sheets, causing the monomers to stack into fibrils. The fibrils are remarkably robust, considering that the monomers are bound non-covalently. Finally, a common characteristic of fibrils is their unbranched, straight, fiber-like structure arising from the intertwining of the multiple β-sheet filaments. These remarkably ordered and stable nanofibrils can be useful as building blocks for protein-based functional materials, but they are also implicated in severe neurodegenerative diseases. The overall aim of this article is to highlight recent efforts aimed at obtaining insights into amyloid proteins on different length scales. Starting from molecular information on amyloids, single fibril properties and mechanical properties of networks of fibrils are described. Specifically, we focus on the self-assembly of amyloid protein fibrils composed of peptides and denatured model proteins, as well as the influence of inhibitors of fibril formation. Additionally, we will demonstrate how the application of recently developed vibrational spectroscopic techniques has emerged as a powerful approach to gain spatially resolved information on the structure-function relation of amyloids. While spectroscopy provides information on local molecular conformations and protein secondary structure, information on the single fibril level has been developed by diverse microscopic techniques. The approaches to reveal basic mechanical properties of single fibrils like bending rigidity, shear modulus, ultimate tensile strength and fracture behavior are illustrated. Lastly, mechanics of networks of amyloid fibrils, typically forming viscoelastic gels are outlined, with a focus on (micro-) rheological properties. The resulting fundamental insights are essential for the rational design of novel edible and biodegradable protein-based polymers, but also to devise therapeutic strategies to combat amyloid assembly and accumulation during pathogenic disorders.
- ItemThe enhanced Sanov theorem and propagation of chaos(Amsterdam [u.a.] : Elsevier, 2017) Deuschel, Jean-Dominique; Friz, Peter K.; Maurelli, Mario; Slowik, MartinWe establish a Sanov type large deviation principle for an ensemble of interacting Brownian rough paths. As application a large deviations for the (-layer, enhanced) empirical measure of weakly interacting diffusions is obtained. This in turn implies a propagation of chaos result in a space of rough paths and allows for a robust analysis of the particle system and its McKean–Vlasov type limit, as shown in two corollaries.
- ItemVisualisation and analysis of shear-deformation bands in unconsolidated Pleistocene sand using ground-penetrating radar: Implications for paleoseismological studies(Amsterdam [u.a.] : Elsevier, 2018) Brandes, Christian; Igel, Jan; Loewer, Markus; Tanner, David C.; Lang, Jörg; Müller, Katharina; Winsemann, JuttaDeformation bands in unconsolidated sediments are of great value for paleoseismological studies in sedimentary archives. Using ground-penetrating radar (GPR), we investigated an array of shear-deformation bands that developed in unconsolidated Pleistocene glacifluvial Gilbert-type delta sediments. A dense grid (spacing 0.6 m) of GPR profiles was measured on top of a 20 m-long outcrop that exposes shear-deformation bands. Features in the radargrams could be directly tied to the exposure. The shear-deformation bands are partly represented by inclined reflectors and partly by the offset of reflections at delta clinoforms. 3-D interpretation of the 2-D radar sections shows that the bands have near-planar geometries that can be traced throughout the entire sediment volume. Thin sections of sediment samples show that the analysed shear-deformation bands have a denser grain packing than the host sediment. Thus they have a lower porosity and smaller pore sizes and therefore, in the vadose zone, the deformation bands have a higher water content due to enhanced capillary forces. This, together with the partially-developed weak calcite cementation and the distinct offset along the bands, are likely the main reasons for the clear and unambiguous expression of the shear-deformation bands in the radar survey. The study shows that deformation-band arrays can clearly be detected using GPR and quickly mapped over larger sediment volumes. With the 3-D analysis, it is further possible to derive the orientation and geometry of the bands. This allows correlation of the bands with the regional fault trend. Studying deformation bands in unconsolidated sediments with GPR is therefore a powerful approach in paleoseismological studies. Based on our data, we postulate that the outcrop is part of a dextral strike-slip zone that was reactivated by glacial isostatic adjustment.
- ItemLiquid sensing: Smart polymer/CNT composites(Amsterdam [u.a.] : Elsevier, 2011) Villmow, T.; Pegel, S.; John, A.; Rentenberger, R.; Pötschke, P.Today polymer/carbon nanotube (CNT) composites can be found in sports equipment, cars, and electronic devices. The growth of old and new markets in this area has been stimulated by our increased understanding of relevant production and processing methods, as well as the considerable price reduction of industrial CNT grades. In particular, CNT based electrically conductive polymer composites (CPCs) offer a range of opportunities because of their unique property profile; they demonstrate low specific gravity in combination with relatively good mechanical properties and processability. The electrical conductivity of polymer/CNT composites results from a continuous filler network that can be affected by various external stimuli, such as temperature shifts, mechanical deformations, and the presence of gases and vapors or solvents. Accordingly, CNT based CPCs represent promising candidates for the design of smart components capable of integrated monitoring. In this article we focus on their use as leakage detectors for organic solvents.
- ItemToward mixed-element meshing based on restricted Voronoi diagrams(Amsterdam [u.a.] : Elsevier, 2014) Pellerin, J.; Lévy, B.; Caumon, G.In this paper we propose a method to generate mixed-element meshes (tetrahedra, triangular prisms, square pyramids) for B-Rep models. The vertices, edges, facets, and cells of the final volumetric mesh are determined from the combinatorial analysis of the intersections between the model components and the Voronoi diagram of sites distributed to sample the model. Inside the volumetric regions, Delaunay tetrahedra dual of the Voronoi diagram are built. Where the intersections of the Voronoi cells with the model surfaces have a unique connected component, tetrahedra are modified to fit the input triangulated surfaces. Where these intersections are more complicated, a correspondence between the elements of the Voronoi diagram and the elements of the mixedelement mesh is used to build the final volumetric mesh. The method which was motivated by meshing challenges encountered in geological modeling is demonstrated on several 3D synthetic models of subsurface rock volumes.
- ItemMillennial-scale fluctuations in Saharan dust supply across the decline of the African Humid Period(Amsterdam [u.a.] : Elsevier, 2017) Zielhofer, Christoph; von Suchodoletz, Hans; Fletcher, William J.; Schneider, Birgit; Dietze, Elisabeth; Schlegel, Michael; Schepanski, Kerstin; Weninger, Bernhard; Mischke, Steffen; Mikdad, AbdeslamThe Sahara is the world's largest dust source with significant impacts on trans-Atlantic terrestrial and large-scale marine ecosystems. Contested views about a gradual or abrupt onset of Saharan aridity at the end of the African Humid Period dominate the current scientific debate about the Holocene Saharan desiccation. In this study, we present a 19.63 m sediment core sequence from Lake Sidi Ali (Middle Atlas, Morocco) at the North African desert margin. We reconstruct the interaction between Saharan dust supply and Western Mediterranean hydro-climatic variability during the last 12,000 yr based on analyses of lithogenic grain-sizes, XRF geochemistry and stable isotopes of ostracod shells. A robust chronological model based on AMS 14C dated pollen concentrates supports our multi-proxy study. At orbital-scale there is an overall increase in southern dust supply from the Early Holocene to the Late Holocene, but our Northern Saharan dust record indicates that a gradual Saharan desiccation was interrupted by multiple abrupt dust increases before the ‘southern dust mode‘ was finally established at 4.7 cal ka BP. The Sidi Ali record features millennial peaks in Saharan dust increase at about 11.1, 10.2, 9.4, 8.2, 7.3, 6.6, 6.0, and 5.0 cal ka BP. Early Holocene Saharan dust peaks coincide with Western Mediterranean winter rain minima and North Atlantic cooling events. In contrast, Late Holocene dust peaks correspond mostly with prevailing positive phases of the North Atlantic Oscillation. By comparing with other North African records, we suggest that increases in Northern Saharan dust supply do not solely indicate sub-regional to regional aridity in Mediterranean Northwest Africa but might reflect aridity at a trans-Saharan scale. In particular, our findings support major bimillennial phases of trans-Saharan aridity at 10.2, 8.2, 6.0 and 4.2 cal ka BP. These phases coincide with North Atlantic cooling and a weak African monsoon.
- ItemRegionalisation of global insights into dryland vulnerability: Better reflecting smallholders' vulnerability in Northeast Brazil(Amsterdam [u.a.] : Elsevier, 2014) Sietz, D.Global analyses of vulnerability reveal generic insights into the relation between socio-ecological systems and the stress impacting upon them including climate and market variability. They thus provide a valuable basis for better understanding and comparing the evolution of socio-ecological systems from a broad perspective. However, even when reflecting sub-national differences, global assessments necessarily aggregate regional variations in the underlying conditions of vulnerability. Refinements are therefore necessary to better accommodate context-specific processes and hence facilitate vulnerability reduction. This study presents a novel methodology to refining global insights into vulnerability at a regional scale. It is based on a spatially explicit link between broad patterns of vulnerability and modelled regional smallholder development. Its application in order to better represent the drylands of Northeast Brazil reveals specific facets of smallholders' vulnerability at the municipio level, reflecting non-linear dynamics. The results show that smallholders' vulnerability was widely exacerbated in the most vulnerable areas. One key mechanism causing such a vulnerability increase involved intensifying resource degradation and the related potential for impoverishment as modelled at the regional scale. In addition, by subsequently re-orienting their livelihoods towards off-farm activities, smallholders became more sensitive to fluctuations and competition in the labour market. In contrast to these critical trends, living and environmental conditions improved in only some areas, thus indicating a decrease in vulnerability. Altogether, in differentiating the heterogeneity of resource management and smallholders' livelihoods, the regional refinement presented in this study indicates necessary adjustments to generic strategies for vulnerability reduction gained at the global scale.