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- ItemConsensusPrime—A Bioinformatic Pipeline for Ideal Consensus Primer Design(Basel : MDPI, 2022) Collatz, Maximilian; Braun, Sascha D.; Monecke, Stefan; Ehricht, RalfBackground: High-quality oligonucleotides for molecular amplification and detection procedures of diverse target sequences depend on sequence homology. Processing input sequences and identifying homogeneous regions in alignments can be carried out by hand only if they are small and contain sequences of high similarity. Finding the best regions for large and inhomogeneous alignments needs to be automated. Results: The ConsensusPrime pipeline was developed to sort out redundant and technical interfering data in multiple sequence alignments and detect the most homologous regions from multiple sequences. It automates the prediction of optimal consensus primers for molecular analytical and sequence-based procedures/assays. Conclusion: ConsensusPrime is a fast and easy-to-use pipeline for predicting optimal consensus primers that is executable on local systems without depending on external resources and web services. An implementation in a Docker image ensures platform-independent executability and installability despite the combination of multiple programs. The source code and installation instructions are publicly available on GitHub.
- ItemInvestigating Solid and Liquid Desiccant Dehumidification Options for Room Air-Conditioning and Drying Applications(Basel : MDPI, 2020) Naik, B. Kiran; Joshi, Mullapudi; Muthukumar, Palanisamy; Sultan, Muhammad; Miyazaki, Takahiko; Shamshiri, Redmond R.; Ashraf, HadeedThis study reports on the investigation of the performance of single and two-stage liquid and solid desiccant dehumidification systems and two-stage combined liquid and solid desiccant dehumidification systems with reference to humid climates. The research focus is on a dehumidification system capacity of 25 kW designed for room air conditioning application using the thermal models reported in the literature. RD-type silica gel and LiCl are used as solid and liquid desiccant materials, respectively. In this study, the application of proposed system for deep drying application is also explored. Condensation rate and moisture removal efficiency are chosen as performance parameters for room air conditioning application, whereas air outlet temperature is chosen as performance parameter for deep drying application. Further, for a given range of operating parameters, influences of air inlet humidity ratio, flow rate, and inlet temperature on performance parameters of the systems are investigated. In humid climatic conditions, it has been observed that a two-stage liquid desiccant dehumidification system is more effective for room air conditioning application, and two-stage solid desiccant dehumidification system is more suitable for deep drying application in the temperature range of 50 to 70 °C, while single-stage solid desiccant and two-stage combined liquid and solid desiccant dehumidification systems are more effective for low temperature, i.e., 30 to 50 °C deep drying application.
- ItemEffect of Liquid Hot Water Pretreatment on Hydrolysates Composition and Methane Yield of Rice Processing Residue(Basel : MDPI, 2021) López González, Lisbet Mailin; Heiermann, MonikaLignocellulosic rice processing residue was pretreated in liquid hot water (LHW) at three different temperatures (140, 160, and 180 °C) and two pretreatment times (10 and 20 min) in order to assess its effects on hydrolysates composition, matrix structural changes and methane yield. The concentrations of acetic acid, 5-hydroxymethylfurfural and furfural increased with pretreatment severity (log Ro). The maximum methane yield (276 L kg−1 VS) was achieved under pretreatment conditions of 180 °C for 20 min, with a 63% increase compared to untreated biomass. Structural changes resulted in a slight removal of silica on the upper portion of rice husks, visible predominantly at maximum severity. However, the outer epidermis was kept well organized. The results indicate, at severities 2.48 ≤ log Ro ≤ 3.66, a significant potential for the use of LHW to improve methane production from rice processing residue.
- ItemInvestigation of the Effects of Torrefaction Temperature and Residence Time on the Fuel Quality of Corncobs in a Fixed-Bed Reactor(Basel : MDPI, 2022) Orisaleye, Joseph I.; Jekayinfa, Simeon O.; Pecenka, Ralf; Ogundare, Adebayo A.; Akinseloyin, Michael O.; Fadipe, Opeyemi L.Biomass from agriculture is a promising alternative fuel due to its carbon-neutral feature. However, raw biomass does not have properties required for its direct utilization for energy generation. Torrefaction is considered as a pretreatment method to improve the properties of biomass for energy applications. This study was aimed at investigating the effects of torrefaction temperature and residence time on some physical and chemical properties of torrefied corncobs. Therefore, a fixed-bed torrefaction reactor was developed and used in the torrefaction of corncobs. The torrefaction process parameters investigated were the torrefaction temperature (200, 240, and 280 °C) and the residence time (30, 60, and 90 min). The effects of these parameters on the mass loss, grindability, chemical composition, and calorific value of biomass were investigated. It was shown that the mass loss increased with increasing torrefaction temperature and residence time. The grinding throughput of the biomass was improved by increasing both the torrefaction temperature and the residence time. Torrefaction at higher temperatures and longer residence times had greater effects on the reduction in particle size of the milled corncobs. The calorific value was highest at a torrefaction temperature of 280 °C and a residence time of 90 min. The energy yield for all treatments ranged between 92.8 and 99.2%. The results obtained in this study could be useful in the operation and design of torrefaction reactors. They also provided insight into parameters to be investigated for optimization of the torrefaction reactor.
- ItemParticulate Matter Dispersion Modeling in Agricultural Applications: Investigation of a Transient Open Source Solver(Basel : MDPI, 2021) Janke, David; Swaminathan, Senthilathiban; Hempel, Sabrina; Kasper, Robert; Amon, ThomasAgriculture is a major emitter of particulate matter (PM), which causes health problems and can act as a carrier of the pathogen material that spreads diseases. The aim of this study was to investigate an open-source solver that simulates the transport and dispersion of PM for typical agricultural applications. We investigated a coupled Eulerian–Lagrangian solver within the open source software package OpenFOAM. The continuous phase was solved using transient large eddy simulations, where four different subgrid-scale turbulence models and an inflow turbulence generator were tested. The discrete phase was simulated using two different Lagrangian solvers. For the validation case of a turbulent flow of a street canyon, the flowfield could be recaptured very well, with errors of around 5% for the non-equilibrium turbulence models (WALE and dynamicKeq) in the main regions. The inflow turbulence generator could create a stable and accurate boundary layer for the mean vertical velocity and vertical profile of the turbulent Reynolds stresses R11. The validation of the Lagrangian solver showed mixed results, with partly good agreements (simulation results within the measurement uncertainty), and partly high deviations of up to 80% for the concentration of particles. The higher deviations were attributed to an insufficient turbulence regime of the used validation case, which was an experimental chamber. For the simulation case of PM dispersion from manure application on a field, the solver could capture the influence of features such as size and density on the dispersion. The investigated solver is especially useful for further investigations into time-dependent processes in the near-source area of PM sources.
- ItemA Facile Chemical Method Enabling Uniform Zn Deposition for Improved Aqueous Zn-Ion Batteries(Basel : MDPI, 2021) Liu, Congcong; Lu, Qiongqiong; Omar, Ahmad; Mikhailova, DariaRechargeable aqueous Zn-ion batteries (ZIBs) have gained great attention due to their high safety and the natural abundance of Zn. Unfortunately, the Zn metal anode suffers from dendrite growth due to nonuniform deposition during the plating/stripping process, leading to a sudden failure of the batteries. Herein, Cu coated Zn (Cu–Zn) was prepared by a facile pretreatment method using CuSO4 aqueous solution. The Cu coating transformed into an alloy interfacial layer with a high affinity for Zn, which acted as a nucleation site to guide the uniform Zn nucleation and plating. As a result, Cu–Zn demonstrated a cycling life of up to 1600 h in the symmetric cells and endowed a stable cycling performance with a capacity of 207 mAh g−1 even after 1000 cycles in the full cells coupled with a V2O5-based cathode. This work provides a simple and effective strategy to enable uniform Zn deposition for improved ZIBs.
- ItemChanges in the Spectrum of Free Fatty Acids in Blood Serum of Dairy Cows during a Prolonged Summer Heat Wave(Basel : MDPI, 2021) Mylostyvyi, Roman; Sejian, Veerasamy; Izhboldina, Olena; Kalinichenko, Olena; Karlova, Lina; Lesnovskay, Olena; Begma, Natalia; Marenkov, Oleh; Lykhach, Vadym; Midyk, Svitlana; Cherniy, Nikolay; Gutyj, Bogdan; Hoffmann, GundulaThis experiment was conducted to study the effect of a prolonged hot period on the fatty acid (FA) composition in blood serum of dairy cows. Eighteen multiparous Holstein cows were randomly assigned to the hyperthermia group (HYP, n = 8) in August (summer season) and the control group (CON, n = 10) in October (autumn season). Blood from animals of the HYP group was collected in one heat wave, which was preceded by a long period of heat stress (HS, temperature-humidity index (THI ≥ 72)). Blood from cows of the CON group was collected under thermal comfort conditions (THI < 68). The spectrum of free fatty acids (FFA) in the blood serum was analyzed by gas chromatography. The concentration of FFA increased, including saturated FAs and monounsaturated FAs, in the blood serum of cows under conditions of prolonged HS. This was associated with the mobilization of FA into the bloodstream from adipose tissue, as a consequence of negative energy balance. An increase in the ratio of n-6/n-3 polyunsaturated FAs may indicate biomembrane dysfunction and adversely affect dairy cows. This study showed that prolonged periods of heat can affect the FA composition of blood. How much this leads to changes in the FA composition of milk and the quality of food products remains to be seen in further research.
- ItemThe Effect of Diet and Farm Management on N2O Emissions from Dairy Farms Estimated from Farm Data(Basel : MDPI, 2021) Menardo, Simona; Lanza, Giacomo; Berg, WernerThe N2O emissions of 21 dairy farms in Germany were evaluated to determine the feasi-bility of an estimation of emissions from farm data and the effects of the farm management, along with possible mitigation strategies. Emissions due to the application of different fertilisers, manure storage and grazing were calculated based on equations from the IPCC (Intergovernmental Panel of Climate Change) and German emission inventory. The dependence of the N2O emissions on fertiliser type and quantity, cultivated crops and diet composition was assessed via correlation analysis and linear regression. The N2O emissions ranged between 0.11 and 0.29 kg CO2eq per kilogram energy-corrected milk, with on average 60% resulting from fertilisation and less than 30% from fertiliser storage and field applications. The total emissions had a high dependence on the diet composition; in particular, on the grass/maize ratio and the protein content of the animal diet, as well as from the manure management. A linear model for the prediction of the N2O emissions based on the diet composition and the fertilisation reached a predictive power of R2 = 0.89. As a possible mitigation strategy, the substitution of slurry for solid manure would reduce N2O emissions by 40%. Feeding cows maize-based diets instead of grass-based diets could reduce them by 14%. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
- ItemEstimation of Vegetative Growth in Strawberry Plants Using Mobile LiDAR Laser Scanner(Basel : MDPI, 2022) Saha, Kowshik Kumar; Tsoulias, Nikos; Weltzien, Cornelia; Zude-Sasse, ManuelaMonitoring of plant vegetative growth can provide the basis for precise crop manage-ment. In this study, a 2D light detection and ranging (LiDAR) laser scanner, mounted on a linear conveyor, was used to acquire multi-temporal three-dimensional (3D) data from strawberry plants (‘Honeoye’ and ‘Malling Centenary’) 14–77 days after planting (DAP). Canopy geometrical variables, i.e., points per plant, height, ground projected area, and canopy volume profile, were extracted from 3D point cloud. The manually measured leaf area exhibited a linear relationship with LiDAR-derived parameters (R2 = 0.98, 0.90, 0.93, and 0.96 with number of points per plant, volume, height, and projected canopy area, respectively). However, the measuring uncertainty was high in the dense canopies. Particularly, the canopy volume estimation was adapted to the plant habitus to remove gaps and empty spaces in the canopy point cloud. The parametric values for maximum point to point distance (Dmax) = 0.15 cm and slice height (S) = 0.10 cm resulted in R2 = 0.80 and RMSPE = 26.93% for strawberry plant volume estimation considering actual volume measured by water displacement. The vertical volume profiling provided growth data for cultivars ‘Honeoye’ and ‘Malling Centenary’ being 51.36 cm3 at 77 DAP and 42.18 cm3 at 70 DAP, respectively. The results contribute an approach for estimating plant geometrical features and particularly strawberry canopy volume profile based on LiDAR point cloud for tracking plant growth.
- ItemCan Green Plants Mitigate Ammonia Concentration in Piglet Barns?(Basel : MDPI, 2021) Menardo, Simona; Berg, Werner; Grüneberg, Heiner; Jakob, MartinaFor animal welfare and for farmers’ health, the concentration of ammonia (NH3 ) in animal houses should be as low as possible. Plants can remove various atmospheric contaminants through the leaf stomata. This study examined the effect of ornamental plants installed inside a piglet barn on the NH3 concentration in the air. Gas measurements of the air in the ‘greened’ compartment (P) and a control compartment (CTR) took place over two measuring periods (summer–autumn and winter). Differences between the NH3 emissions were calculated based on the ventilation rates according to the CO2 balance. Fairly low mean NH3 concentrations between 2 and 4 ppm were measured. The NH3 emissions were about 20% lower (p < 0.01) in P than in CTR, in summer–autumn and in winter period. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.