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- ItemScanning electron microscopy preparation of the cellular actin cortex: A quantitative comparison between critical point drying and hexamethyldisilazane drying(San Francisco, California, US : PLOS, 2021) Schu, Moritz; Terriac, Emmanuel; Koch, Marcus; Paschke, Stephan; Lautenschläger, Franziska; Flormann, Daniel A.D.The cellular cortex is an approximately 200-nm-thick actin network that lies just beneath the cell membrane. It is responsible for the mechanical properties of cells, and as such, it is involved in many cellular processes, including cell migration and cellular interactions with the environment. To develop a clear view of this dense structure, high-resolution imaging is essential. As one such technique, electron microscopy, involves complex sample preparation procedures. The final drying of these samples has significant influence on potential artifacts, like cell shrinkage and the formation of artifactual holes in the actin cortex. In this study, we compared the three most used final sample drying procedures: critical-point drying (CPD), CPD with lens tissue (CPD-LT), and hexamethyldisilazane drying. We show that both hexamethyldisilazane and CPD-LT lead to fewer artifactual mesh holes within the actin cortex than CPD. Moreover, CPD-LT leads to significant reduction in cell height compared to hexamethyldisilazane and CPD. We conclude that the final drying procedure should be chosen according to the reduction in cell height, and so CPD-LT, or according to the spatial separation of the single layers of the actin cortex, and so hexamethyldisilazane.
- ItemQuantifying Water Scarcity in Northern China Within the Context of Climatic and Societal Changes and South-to-North Water Diversion(Hoboken, NJ : Wiley-Blackwell, 2020) Yin, Yuanyuan; Wang, Lei; Wang, Zhongjing; Tang, Qiuhong; Piao, Shilong; Chen, Deliang; Xia, Jun; Conradt, Tobias; Liu, Junguo; Wada, Yoshihide; Cai, Ximing; Xie, Zhenghui; Duan, Qingyun; Li, Xiuping; Zhou, Jing; Zhang, JianyunWith the increasing pressure from population growth and economic development, northern China (NC) faces a grand challenge of water scarcity, which can be further exacerbated by climatic and societal changes. The South-to-North Water Diversion (SNWD) project is designed to mitigate the water scarcity in NC. However, few studies have quantified the impact of the SNWD on water scarcity within the context of climatic and societal changes and its potential effects on economic and agricultural food in the region. We used water supply stress index (WaSSI) to quantify water scarcity within the context of environmental change in NC and developed a method to estimate the economic and agricultural impacts of the SNWD. Focuses were put on alleviating the water supply shortage and economic and agricultural benefits for the water-receiving NC. We find that societal changes, especially economic growth, are the major contributors to water scarcity in NC during 2009–2099. To completely mitigate the water scarcity of NC, at least an additional water supply of 13 billion m3/year (comparable to the annual diversion water by SNWD Central Route) will be necessary. Although SNWD alone cannot provide the full solution to NC's water shortage in next few decades, it can significantly alleviate the water supply stress in NC (particularly Beijing), considerably increasing the agricultural production (more than 115 Tcal/year) and bringing economic benefits (more than 51 billion RMB/year) through supplying industrial and domestic water use. Additionally, the transfer project could have impacts on the ecological environment in the exporting regions. ©2020. The Authors.
- ItemQuantifying Southern Annular Mode paleo-reconstruction skill in a model framework(Katlenburg-Lindau : Copernicus Ges., 2021) Huiskamp, Willem; McGregor, ShaynePast attempts to reconstruct the Southern Annular Mode (SAM) using paleo-archives have resulted in records which can differ significantly from one another prior to the window over which the proxies are calibrated. This study attempts to quantify not only the skill with which we may expect to reconstruct the SAM but also to assess the contribution of regional bias in proxy selection and the impact of non-stationary proxy–SAM teleconnections on a resulting reconstruction. This is achieved using a pseudoproxy framework with output from the GFDL CM2.1 global climate model. Reconstructions derived from precipitation fields perform better, with 89 % of the reconstructions calibrated over a 61 year window able to reproduce at least 50 % of the inter-annual variance in the SAM, as opposed to just 25 % for surface air temperature (SAT)-derived reconstructions. Non-stationarity of proxy–SAM teleconnections, as defined here, plays a small role in reconstructions, but the range in reconstruction skill is not negligible. Reconstructions are most likely to be skilful when proxies are sourced from a geographically broad region with a network size of at least 70 proxies.
- ItemComputational tissue staining of non-linear multimodal imaging using supervised and unsupervised deep learning(Washington, DC : OSA, 2021) Pradhan, Pranita; Meyer, Tobias; Vieth, Michael; Stallmach, Andreas; Waldner, Maximilian; Schmitt, Michael; Popp, Juergen; Bocklitz, ThomasHematoxylin and Eosin (H&E) staining is the 'gold-standard' method in histopathology. However, standard H&E staining of high-quality tissue sections requires long sample preparation times including sample embedding, which restricts its application for 'real-time' disease diagnosis. Due to this reason, a label-free alternative technique like non-linear multimodal (NLM) imaging, which is the combination of three non-linear optical modalities including coherent anti-Stokes Raman scattering, two-photon excitation fluorescence and second-harmonic generation, is proposed in this work. To correlate the information of the NLM images with H&E images, this work proposes computational staining of NLM images using deep learning models in a supervised and an unsupervised approach. In the supervised and the unsupervised approach, conditional generative adversarial networks (CGANs) and cycle conditional generative adversarial networks (cycle CGANs) are used, respectively. Both CGAN and cycle CGAN models generate pseudo H&E images, which are quantitatively analyzed based on mean squared error, structure similarity index and color shading similarity index. The mean of the three metrics calculated for the computationally generated H&E images indicate significant performance. Thus, utilizing CGAN and cycle CGAN models for computational staining is beneficial for diagnostic applications without performing a laboratory-based staining procedure. To the author's best knowledge, it is the first time that NLM images are computationally stained to H&E images using GANs in an unsupervised manner.
- ItemUniversality in spectral condensation([London] : Macmillan Publishers Limited, part of Springer Nature, 2020) Pavithran, Induja; Unni, Vishnu R.; Varghese, Alan J.; Premraj, D.; Sujith, R. I.; Vijayan, C.; Saha, Abhishek; Marwan, Norbert; Kurths, JürgenSelf-organization is the spontaneous formation of spatial, temporal, or spatiotemporal patterns in complex systems far from equilibrium. During such self-organization, energy distributed in a broadband of frequencies gets condensed into a dominant mode, analogous to a condensation phenomenon. We call this phenomenon spectral condensation and study its occurrence in fluid mechanical, optical and electronic systems. We define a set of spectral measures to quantify this condensation spanning several dynamical systems. Further, we uncover an inverse power law behaviour of spectral measures with the power corresponding to the dominant peak in the power spectrum in all the aforementioned systems.