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- ItemSemantic segmentation of non-linear multimodal images for disease grading of inflammatory bowel disease: A segnet-based application([Sétubal] : SCITEPRESS - Science and Technology Publications Lda., 2019) Pradhan, Pranita; Meyer, Tobias; Vieth, Michael; Stallmach, Andreas; Waldner, Maximilian; Schmitt, Michael; Popp, Juergen; Bocklitz, Thomas; De Marsico, Maria; Sanniti di Baja, Gabriella; Fred, AnaNon-linear multimodal imaging, the combination of coherent anti-stokes Raman scattering (CARS), two-photon excited fluorescence (TPEF) and second harmonic generation (SHG), has shown its potential to assist the diagnosis of different inflammatory bowel diseases (IBDs). This label-free imaging technique can support the ‘gold-standard’ techniques such as colonoscopy and histopathology to ensure an IBD diagnosis in clinical environment. Moreover, non-linear multimodal imaging can measure biomolecular changes in different tissue regions such as crypt and mucosa region, which serve as a predictive marker for IBD severity. To achieve a real-time assessment of IBD severity, an automatic segmentation of the crypt and mucosa regions is needed. In this paper, we semantically segment the crypt and mucosa region using a deep neural network. We utilized the SegNet architecture (Badrinarayanan et al., 2015) and compared its results with a classical machine learning approach. Our trained SegNet mod el achieved an overall F1 score of 0.75. This model outperformed the classical machine learning approach for the segmentation of the crypt and mucosa region in our study.
- ItemHollow square core fiber sensor for physical parameters measurement(Bristol : IOP Publ., 2022) Pereira, Diana; Bierlich, Jörg; Kobelke, Jens; Ferreira, Marta S.The measurement of physical parameters is important in many current applications, since they often rely on these measurands to operate with the due quality and the necessary safety. In this work, a simple and robust optical fiber sensor based on an antiresonant hollow square core fiber (HSCF) is proposed to measure simultaneously temperature, strain, and curvature. The proposed sensor was designed in a transmission configuration where a segment of HSCF, with a 10 mm length, was spliced between two single mode fibers. In this sensor, a cladding modal interference (CMI) and a Mach-Zehnder interference (MZI) are enhanced along with the antiresonance (AR) guidance. All the present mechanisms exhibit different responses towards the physical parameters. For the temperature, sensitivities of 32.8 pm/°C, 18.9 pm/°C, and 15.7 pm/°C were respectively attained for the MZI, AR, and CMI. As for the strain, sensitivities of 0.45 pm/μϵ, -0.93 pm/μϵ, and -2.72 pm/μϵ were acquired for the MZI, AR and CMI respectively. Meanwhile, for the curvature measurements, two regions of analysis were considered. In the first region (0 m-1 - 0.7 m-1) sensitivities of 0.033 nm/m-1, -0.27 nm/m-1, and -2.21 nm/m-1 were achieved, whilst for the second region (0.7 m-1 - 1.5 m-1) sensitivities of 0.067 nm/m-1, -0.63 nm/m-1, and -0.49 nm/m-1 were acquired for the MZI, AR and CMI, respectively.
- ItemCapillary based hybrid fiber sensor in a balloon-like shape for simultaneous measurement of displacement and temperature(Bristol : IOP Publ., 2022) Santos, João P.; Bierlich, Jörg; Kobelke, Jens; Ferreira, Marta S.In this work, a hybrid sensor based on a silica capillary in a balloon-like shape for simultaneous measurement of displacement and temperature is proposed for the first time, to the best of our knowledge. The sensor is fabricated by splicing a segment of a hollow core fiber between two single mode fibers (SMF) and by bending the fiber in a balloon shape with the capillary at the top-center position. In a transmission scheme, the SMF-capillary-SMF configuration excites an antiresonant (AR) guidance and the balloon shape enhances a Mach-Zehnder interferometer (MZI). The different responses of the interferometers to external displacement and temperature variations are conducive to a hybrid application of the sensor for simultaneous measurement of these parameters. Experimental results show that, for a capillary length of 1.2 cm and a balloon length of 4 cm, AR is insensitive to displacement and its sensitivity to temperature is 14.3 pm/°C, while the MZI has a sensitivity to displacement of 1.68 nm/mm and twice the sensitivity of AR to temperature, of 28.6 pm/°C. The proposed fiber sensor consists of only one sensing element in one configuration exciting two interferometers at the same time, which makes it of simple fabrication as well as low cost.
- ItemA Computational Pipeline for Sepsis Patients’ Stratification and Diagnosis([Setúbal, Portugal] : SCITEPRESS - Science and Technology Publications, Lda., 2018) Campos, David; Pinho, Renato; Neugebauer, Ute; Popp, Juergen; Oliveira, José Luis; Zwiggelaar, Reyer; Gamboa, Hugo; Fred, Ana; Bermúdez i Badia, SergiSepsis is still a little acknowledged public health issue, despite its increasing incidence and the growing mortality rate. In addition, a clear diagnosis can be lengthy and complicated, due to highly variable symptoms and non-specific criteria, causing the disease to be diagnosed and treated too late. This paper presents the HemoSpec platform, a decision support system which, by collecting and automatically processing data from several acquisition devices, can help in the early diagnosis of sepsis.
- ItemFrequency dependence of magnetothermal properties for magnetic fluid and magnetically functionalized implants(Les Ulis : EDP Sciences, 2018) Salakhova, R.T.; Vylegzhanin, A. G.; Kashtanov, E.A.; Zverev, V.I.; Müller, R.; de Sena Pereira, F.D.; Parfenov, V.A.; Mironov, V.A.; Kritskaya, E.A.; Pyatakov, A.P.; Markov, V.K.; Malyshev, A.Yu; Kamilov, K.I; Tishin, A.M; Perov, N.; Semisalova, A.Heating of the magnetic nanoparticles in AC magnetic field is the effect promising for application in medicine. The mechanisms of heating in AC-magnetic field implies nontrivial dependence of the power dissipated by magnetic nanoparticles on frequency. With the use of a reconfigurable experimental setup, this frequency-dependent magnetic heating was measured on two characteristic examples: the magnetite nanoparticles conventionally used in medicine and polymer coating with micrometer sized magnetite particles. The saturation of the heating power with frequency is shown that is more pronounced for the second case of microparticles.