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- ItemConsensusPrime—A Bioinformatic Pipeline for Ideal Consensus Primer Design(Basel : MDPI, 2022) Collatz, Maximilian; Braun, Sascha D.; Monecke, Stefan; Ehricht, RalfBackground: High-quality oligonucleotides for molecular amplification and detection procedures of diverse target sequences depend on sequence homology. Processing input sequences and identifying homogeneous regions in alignments can be carried out by hand only if they are small and contain sequences of high similarity. Finding the best regions for large and inhomogeneous alignments needs to be automated. Results: The ConsensusPrime pipeline was developed to sort out redundant and technical interfering data in multiple sequence alignments and detect the most homologous regions from multiple sequences. It automates the prediction of optimal consensus primers for molecular analytical and sequence-based procedures/assays. Conclusion: ConsensusPrime is a fast and easy-to-use pipeline for predicting optimal consensus primers that is executable on local systems without depending on external resources and web services. An implementation in a Docker image ensures platform-independent executability and installability despite the combination of multiple programs. The source code and installation instructions are publicly available on GitHub.
- ItemRobust increase of Indian monsoon rainfall and its variability under future warming in CMIP6 models(Göttingen : Copernicus, 2021) Katzenberger, Anja; Schewe, Jacob; Pongratz, Julia; Levermann, AndersThe Indian summer monsoon is an integral part of the global climate system. As its seasonal rainfall plays a crucial role in India's agriculture and shapes many other aspects of life, it affects the livelihood of a fifth of the world's population. It is therefore highly relevant to assess its change under potential future climate change. Global climate models within the Coupled Model Intercomparison Project Phase 5 (CMIP5) indicated a consistent increase in monsoon rainfall and its variability under global warming. Since the range of the results of CMIP5 was still large and the confidence in the models was limited due to partly poor representation of observed rainfall, the updates within the latest generation of climate models in CMIP6 are of interest. Here, we analyze 32 models of the latest CMIP6 exercise with regard to their annual mean monsoon rainfall and its variability. All of these models show a substantial increase in June-to-September (JJAS) mean rainfall under unabated climate change (SSP5-8.5) and most do also for the other three Shared Socioeconomic Pathways analyzed (SSP1-2.6, SSP2-4.5, SSP3-7.0). Moreover, the simulation ensemble indicates a linear dependence of rainfall on global mean temperature with a high agreement between the models independent of the SSP if global warming is the dominant forcing of the monsoon dynamics as it is in the 21st century; the multi-model mean for JJAS projects an increase of 0.33 mm d−1 and 5.3 % per kelvin of global warming. This is significantly higher than in the CMIP5 projections. Most models project that the increase will contribute to the precipitation especially in the Himalaya region and to the northeast of the Bay of Bengal, as well as the west coast of India. Interannual variability is found to be increasing in the higher-warming scenarios by almost all models. The CMIP6 simulations largely confirm the findings from CMIP5 models, but show an increased robustness across models with reduced uncertainties and updated magnitudes towards a stronger increase in monsoon rainfall.
- ItemInvestigating Solid and Liquid Desiccant Dehumidification Options for Room Air-Conditioning and Drying Applications(Basel : MDPI, 2020) Naik, B. Kiran; Joshi, Mullapudi; Muthukumar, Palanisamy; Sultan, Muhammad; Miyazaki, Takahiko; Shamshiri, Redmond R.; Ashraf, HadeedThis study reports on the investigation of the performance of single and two-stage liquid and solid desiccant dehumidification systems and two-stage combined liquid and solid desiccant dehumidification systems with reference to humid climates. The research focus is on a dehumidification system capacity of 25 kW designed for room air conditioning application using the thermal models reported in the literature. RD-type silica gel and LiCl are used as solid and liquid desiccant materials, respectively. In this study, the application of proposed system for deep drying application is also explored. Condensation rate and moisture removal efficiency are chosen as performance parameters for room air conditioning application, whereas air outlet temperature is chosen as performance parameter for deep drying application. Further, for a given range of operating parameters, influences of air inlet humidity ratio, flow rate, and inlet temperature on performance parameters of the systems are investigated. In humid climatic conditions, it has been observed that a two-stage liquid desiccant dehumidification system is more effective for room air conditioning application, and two-stage solid desiccant dehumidification system is more suitable for deep drying application in the temperature range of 50 to 70 °C, while single-stage solid desiccant and two-stage combined liquid and solid desiccant dehumidification systems are more effective for low temperature, i.e., 30 to 50 °C deep drying application.
- ItemEffect of Liquid Hot Water Pretreatment on Hydrolysates Composition and Methane Yield of Rice Processing Residue(Basel : MDPI, 2021) López González, Lisbet Mailin; Heiermann, MonikaLignocellulosic rice processing residue was pretreated in liquid hot water (LHW) at three different temperatures (140, 160, and 180 °C) and two pretreatment times (10 and 20 min) in order to assess its effects on hydrolysates composition, matrix structural changes and methane yield. The concentrations of acetic acid, 5-hydroxymethylfurfural and furfural increased with pretreatment severity (log Ro). The maximum methane yield (276 L kg−1 VS) was achieved under pretreatment conditions of 180 °C for 20 min, with a 63% increase compared to untreated biomass. Structural changes resulted in a slight removal of silica on the upper portion of rice husks, visible predominantly at maximum severity. However, the outer epidermis was kept well organized. The results indicate, at severities 2.48 ≤ log Ro ≤ 3.66, a significant potential for the use of LHW to improve methane production from rice processing residue.
- ItemThe vertical aerosol type distribution above Israel – 2 years of lidar observations at the coastal city of Haifa(Katlenburg-Lindau : EGU, 2022) Heese, Birgit; Floutsi, Athena Augusta; Baars, Holger; Althausen, Dietrich; Hofer, Julian; Herzog, Alina; Mewes, Silke; Radenz, Martin; Schechner, Yoav Y.For the first time, vertically resolved long-term lidar measurements of the aerosol distribution were conducted in Haifa, Israel. The measurements were performed by a PollyXT multi-wavelength Raman and polarization lidar. The lidar was measuring continuously over a 2-year period from March 2017 to May 2019. The resulting data set is a series of manually evaluated lidar optical property profiles. To identify the aerosol types in the observed layers, a novel aerosol typing method that was developed at TROPOS is used. This method applies optimal estimation to a combination of lidar-derived intensive aerosol properties to determine the statistically most-likely contribution per aerosol component in terms of relative volume. A case study that shows several elevated aerosol layers illustrates this method and shows, for example, that coarse dust particles are observed up to 5ĝ€¯km height over Israel. From the whole data set, the seasonal distribution of the observed aerosol components over Israel is derived. Throughout all seasons, coarse spherical particles like sea salt and hygroscopically grown continental aerosol were observed. These particles originate from continental Europe and were transported over the Mediterranean Sea. Sea-salt particles were observed frequently due to the coastal site of Haifa. The highest contributions of coarse spherical particles are present in summer, autumn, and winter. During spring, mostly coarse non-spherical particles that are attributed to desert dust were observed. This is consistent with the distinct dust season in spring in Israel. An automated time-height-resolved air mass source attribution method identifies the origin of the dust in the Sahara and the Arabian deserts. Fine-mode spherical particles contribute significantly to the observed aerosol mixture during all seasons. These particles originate mainly from the industrial region at the bay of Haifa.
- ItemAnalysis of electronic properties frommagnetotransport measurements on Ba(Fe1-xNix)2As2 thin films(Basel : MDPI AG, 2020) Shipulin, I.; Richter, S.; Thomas, A.A.; Nielsch, K.; Hühne, R.; Martovitsky, V.We performed a detailed structural, magnetotransport, and superconducting analysis of thin epitaxial Ba(Fe1-xNix)2As2 films with Ni doping of x = 0.05 and 0.08, as prepared by pulsed laser deposition. X-ray diffraction studies demonstrate the high crystalline perfection of the films, which have a similar quality to single crystals. Furthermore, magnetotransport measurements of the films were performed in magnetic fields up to 9 T. The results we used to estimate the density of electronic states at the Fermi level, the coefficient of electronic heat capacity, and other electronic parameters for this compound, in their dependence on the dopant concentration within the framework of the Ginzburg-Landau-Abrikosov-Gorkov theory. The comparison of the determined parameters with measurement data on comparable Ba(Fe1-xNix)2As2 single crystals shows good agreement, which confirms the high quality of the obtained films.
- ItemInvestigation of the Effects of Torrefaction Temperature and Residence Time on the Fuel Quality of Corncobs in a Fixed-Bed Reactor(Basel : MDPI, 2022) Orisaleye, Joseph I.; Jekayinfa, Simeon O.; Pecenka, Ralf; Ogundare, Adebayo A.; Akinseloyin, Michael O.; Fadipe, Opeyemi L.Biomass from agriculture is a promising alternative fuel due to its carbon-neutral feature. However, raw biomass does not have properties required for its direct utilization for energy generation. Torrefaction is considered as a pretreatment method to improve the properties of biomass for energy applications. This study was aimed at investigating the effects of torrefaction temperature and residence time on some physical and chemical properties of torrefied corncobs. Therefore, a fixed-bed torrefaction reactor was developed and used in the torrefaction of corncobs. The torrefaction process parameters investigated were the torrefaction temperature (200, 240, and 280 °C) and the residence time (30, 60, and 90 min). The effects of these parameters on the mass loss, grindability, chemical composition, and calorific value of biomass were investigated. It was shown that the mass loss increased with increasing torrefaction temperature and residence time. The grinding throughput of the biomass was improved by increasing both the torrefaction temperature and the residence time. Torrefaction at higher temperatures and longer residence times had greater effects on the reduction in particle size of the milled corncobs. The calorific value was highest at a torrefaction temperature of 280 °C and a residence time of 90 min. The energy yield for all treatments ranged between 92.8 and 99.2%. The results obtained in this study could be useful in the operation and design of torrefaction reactors. They also provided insight into parameters to be investigated for optimization of the torrefaction reactor.
- ItemComparative study between ground-based observations and NAVGEM-HA analysis data in the mesosphere and lower thermosphere region(Katlenburg-Lindau : EGU, 2020) Stober, Gunter; Baumgarten, Kathrin; McCormack, John P.; Brown, Peter; Czarnecki, JerryRecent studies have shown that day-to-day variability of the migrating semidiurnal solar (SW2) tide within the mesosphere and lower thermosphere (MLT) is a key driver of anomalies in the thermosphere-ionosphere system. Here, we study the variability in both the amplitude and phase of SW2 using meteor radar wind and lidar temperature observations at altitudes of 75-110 km as well as wind and temperature output from the Navy Global Environmental Model-High Altitude (NAVGEM-HA), a high-altitude meteorological analysis system. Application of a new adaptive spectral filter technique to both local radar wind observations and global NAVGEM-HA analyses offers an important cross-validation of both data sets and makes it possible to distinguish between migrating and non-migrating tidal components, which is difficult using local measurements alone. Comparisons of NAVGEM-HA, meteor radar and lidar observations over a 12-month period show that the meteorological analyses consistently reproduce the seasonal as well as day-to-day variability in mean winds, mean temperatures and SW2 features from the ground-based observations. This study also examines in detail the day-to-day variability in SW2 during two sudden stratospheric warming, events that have been implicated in producing ionospheric anomalies. During this period, both meteor radar and NAVGEM-HA winds show a significant phase shift and amplitude modulation, but no signs of coupling to the lunar tide as previous studies have suggested. Overall, these findings demonstrate the benefit of combining global high-altitude meteorological analyses with ground-based observations of the MLT region to better understand the tidal variability in the atmosphere. © 2020 Author(s).
- ItemAerosol pollution maps and trends over Germany with hourly data at four rural background stations from 2009 to 2018(Katlenburg-Lindau : EGU, 2020) Heintzenberg, Jost; Birmili, Wolfram; Hellack, Bryan; Spindler, Gerald; Tuch, Thomas; Wiedensohler, AlfredA total of 10 years of hourly aerosol and gas data at four rural German stations have been combined with hourly back trajectories to the stations and inventories of the European Emissions Database for Global Atmospheric Research (EDGAR), yielding pollution maps over Germany of PM10, particle number concentrations, and equivalent black carbon (eBC). The maps reflect aerosol emissions modified with atmospheric processes during transport between sources and receptor sites. Compared to emission maps, strong western European emission centers do not dominate the downwind concentrations because their emissions are reduced by atmospheric processes on the way to the receptor area. PM10, eBC, and to some extent also particle number concentrations are rather controlled by emissions from southeastern Europe from which pollution transport often occurs under drier conditions. Newly formed particles are found in air masses from a broad sector reaching from southern Germany to western Europe, which we explain with gaseous particle precursors coming with little wet scavenging from this region. Annual emissions for 2009 of PM10, BC, SO2, and NOx were accumulated along each trajectory and compared with the corresponding measured time series. The agreement of each pair of time series was optimized by varying monthly factors and annual factors on the 2009 emissions. This approach yielded broader summer emission minima than published values that were partly displaced from the midsummer positions. The validity of connecting the ambient concentration and emission of particulate pollution was tested by calculating temporal changes in eBC for subsets of back trajectories passing over two separate prominent emission regions, region A to the northwest and B to the southeast of the measuring stations. Consistent with reported emission data the calculated emission decreases over region A are significantly stronger than over region B.
- ItemImproving AlN Crystal Quality and Strain Management on Nanopatterned Sapphire Substrates by High-Temperature Annealing for UVC Light-Emitting Diodes(Weinheim : Wiley-VCH, 2020) Hagedorn, Sylvia; Walde, Sebastian; Susilo, Norman; Netzel, Carsten; Tillner, Nadine; Unger, Ralph-Stephan; Manley, Phillip; Ziffer, Eviathar; Wernicke, Tim; Becker, Christiane; Lugauer, Hans-Jürgen; Kneissl, Michael; Weyers, MarkusHerein, AlN growth by metalorganic vapor-phase epitaxy on hole-type nanopatterned sapphire substrates is investigated. Cracking occurs for an unexpectedly thin-layer thickness, which is associated to altered nucleation conditions caused by the sapphire pattern. To overcome the obstacle of cracking and at the same time to decrease the threading dislocation density by an order of magnitude, high-temperature annealing (HTA) of a 300 nm-thick AlN starting layer is successfully introduced. By this method, 800 nm-thick, fully coalesced and crack-free AlN is grown on 2 in. nanopatterned sapphire wafers. The usability of such templates as basis for UVC light-emitting diodes (LEDs) is furthermore proved by subsequent growth of an UVC-LED heterostructure with single peak emission at 265 nm. Prerequisites for the enhancement of the light extraction efficiency by hole-type nanopatterned sapphire substrates are discussed. © 2020 The Authors. Published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim