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    Enhanced survival of multi-species biofilms under stress is promoted by low-abundant but antimicrobial-resistant keystone species
    (New York, NY [u.a.] : Science Direct, 2022) Wicaksono, Wisnu Adi; Erschen, Sabine; Krause, Robert; Müller, Henry; Cernava, Tomislav; Berg, Gabriele
    Multi-species biofilms are more resistant against stress compared to single-species biofilms. However, the mechanisms underlying this common observation remain elusive. Therefore, we studied biofilm formation of well-known opportunistic pathogens (Acinetobacter baumanii, Enterococcus faecium, Escherichia coli, Staphylococcus haemolyticus and Stenotrophomonas maltophilia) in various approaches. Synergistic effects in their multi-species biofilms were observed. Using metatranscriptomics, changes in the gene expression of the involved members became evident, and provided explanations for the improved survivability under nutrient limitation and exposure to disinfectants. Genes encoding proteins for vitamin B6 synthesis and iron uptake were linked to synergism in the multi-species biofilm under nutrient-limited conditions. Our study indicates that sub-lethal concentrations of an alcohol-based disinfectant enhance biofilm yields in multi-species assemblages. A reduction of the dominant taxa in the multi-species biofilm under disinfectant pressure allowed minor taxa to bloom. The findings underline the importance of minor but antimicrobial-resistant species that serve as "protectors" for the whole assemblage due to upregulation of genes involved in defence mechanisms and biofilm formation. This ultimately results in an increase in the total yield of the multi-species biofilm. We conclude that inter-species interactions may be crucial for the survival of opportunistic pathogens; especially under conditions that are typically found under hospital settings.
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    The impact of atmospheric boundary layer, opening configuration and presence of animals on the ventilation of a cattle barn
    (Amsterdam [u.a.] : Elsevier Science, 2020) Nosek, Štěpán; Kluková, Zuzana; Jakubcová, Michaela; Yi, Qianying; Janke, David; Demeyer, Peter; Jaňour, Zbyněk
    Naturally ventilated livestock buildings (NVLB) represent one of the most significant sources of ammonia emissions. However, even the dispersion of passive gas in an NVLB is still not well understood. In this paper, we present a detailed investigation of passive pollutant dispersion in a model of a cattle barn using the wind tunnel experiment method. We simulated the pollution of the barn by a ground-level planar source. We used the time-resolved particle image velocimetry (TR-PIV) and the fast flame ionisation detector (FFID) to study the flow and dispersion processes at high spatial and temporal resolution. We employed the Proper Orthogonal Decomposition (POD) and Oscillating Patterns Decomposition (OPD) methods to detect the coherent structures of the flow. The results show that the type of atmospheric boundary layer (ABL) and sidewall opening height have a significant impact on the pollutant dispersion in the barn, while the presence of animals and doors openings are insignificant under conditions of winds perpendicular to the sidewall openings. We found that the dynamic coherent structures, developed by the Kelvin-Helmholtz instability, contribute to the pollutant transport in the barn. We demonstrate that in any of the studied cases the pollutant was not well mixed within the barn and that a significant underestimation (up to by a factor 3) of the barn ventilation might be obtained using, e.g. tracer gas method. © 2020 The Authors
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    Reduce and refine: Plasma treated water vs conventional disinfectants for conveyor-belt cleaning in sustainable food-production lines
    (Melville, NY : American Inst. of Physics, 2021) Weihe, Thomas; Schnabel, Uta; Winter, Hauke; Möller, Timon; Stachowiak, Jörg; Neumann, Sabine; Schlüter, Oliver; Ehlbeck, Jörg
    Sustainable and microbiologically secure foodstuff production lines are of increasing scientific interest and are in the focus of recent research programs. Additionally, they are of great importance for the production industry due to the prevention of food-borne illnesses caused by pathogens such as Salmonella sp., Listeria monocytogenes, or Escherichia coli. These pathogens are responsible for production losses, loss of customer acceptance, and severe food-borne illnesses. A pathogenic threat is frequently combated with sanitizing steps of the production lines. For conveyor band cleaning, this study compares the cleaning abilities of nitric acid (HNO3) and plasma treated water (PTW), which have been sprayed via a commercially available nozzle on two different polymeric surfaces (polysiloxane and polyurethane). Additionally, the cleaning agents HNO3 and PTW have been characterized through their pH and their conductivity. These findings have been underpinned by experiments that focus on a possible influence of nozzle abrasion, such as brass and stainless-steel nanoparticles, on the antimicrobial potential of PTW and HNO3. Adversely acting effects like an enhanced abrasion of conveyer band materials due to PTW or HNO3 treatment have been checked by using light microscopic micrographs and topographic scans in high-resolution mode. Based on the presented results of the experiments, the suitability of an in-place sanitation step in foodstuff production lines has been demonstrated on a laboratory scale.
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    Static Disorder in Excitation Energies of the Fenna-Matthews-Olson Protein: Structure-Based Theory Meets Experiment
    (Washington, DC : ACS, 2020) Chaillet, Martin L.; Lengauer, Florian; Adolphs, Julian; Müh, Frank; Fokas, Alexander S.; Cole, Daniel J.; Chin, Alex W.; Renger, Thomas
    Inhomogeneous broadening of optical lines of the Fenna-Matthews-Olson (FMO) light-harvesting protein is investigated by combining a Monte Carlo sampling of low-energy conformational substates of the protein with a quantum chemical/electrostatic calculation of local transition energies (site energies) of the pigments. The good agreement between the optical spectra calculated for the inhomogeneous ensemble and the experimental data demonstrates that electrostatics is the dominant contributor to static disorder in site energies. Rotamers of polar amino acid side chains are found to cause bimodal distribution functions of site energy shifts, which can be probed by hole burning and single-molecule spectroscopy. When summing over the large number of contributions, the resulting distribution functions of the site energies become Gaussians, and the correlations in site energy fluctuations at different sites practically average to zero. These results demonstrate that static disorder in the FMO protein is in the realm of the central limit theorem of statistics. © 2020 American Chemical Society.
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    Soil conditions and the iron chlorosis of mature vine
    (London [u.a.] : Institute of Physics, 2019) Yutsis, A.E.; Zhelezova, S.V.; Dammer, K.-H.
    Iron-deficiency chlorosis is a usual routine problem on calcareous carbonated soils of Crimea. Different reasons cause vine chlorosis: soil properties, physiological status of plants and others. It was shown that chlorosis spot in the vineyard has constant location. Chlorosis can be identified visually and instrumentally. In this study, an attempt was made to find the relationship between soil electrical resistance and the spread of vine chlorosis.