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    Viticulture in the Laetanian Region (Spain) during the Roman Period: Predictive Modelling and Geomatic Analysis
    (Basel : MDPI AG, 2020) Stubert, Lisa; Oliveras, Antoni Martín i; Märker, Michael; Schernthanner, Harald; Vogel, Sebastian
    Geographic information system (GIS)-based predictive modelling is widely used in archaeology to identify suitable zones for ancient settlement locations and determine underlying factors of their distribution. In this study, we developed predictive models on Roman viticulture in the Laetanian Region (Hispania Citerior-Tarraconensis), using the location of 82 ancient wine-pressing facilities or torcularia as response variables and 15 topographical and 6 socio-economic cost distance datasets as predictor variables. Several predictor variable subsets were selected either by expert knowledge of similar studies or by using a semi-automatization algorithm based on statistical distribution metrics of the input data. The latter aims at simplifying modelling and minimizing the necessity of a priori knowledge. Both approaches predicted the distribution of archeological sites sufficiently well. However, the best prediction performance was obtained by an expert knowledge model utilizing a predictor variable combination based on recommendations on viticulture by Lucius Junius Moderatus Columella, the prominent ancient Roman agronomist. The results indicate that the accessibility of a location and its connectivity to trade routes and distribution centres, determined by terrain steepness, was decisive for the settlement of viticultural facilities. With the knowledge gained, the ancient cultivated area and number of wine-pressing facilities needed for processing the vineyard yields were extrapolated for the entire study region.
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    TRAIT2D: a Software for Quantitative Analysis of Single Particle Diffusion Data
    (London : F1000 Research Ltd, 2021) Reina, Francesco; Wigg, John M.A.; Dmitrieva, Mariia; Lefebvre, Joël; Rittscher, Jens; Eggeling, Christian
    Single particle tracking (SPT) is one of the most widely used tools in optical microscopy to evaluate particle mobility in a variety of situations, including cellular and model membrane dynamics. Recent technological developments, such as Interferometric Scattering microscopy, have allowed recording of long, uninterrupted single particle trajectories at kilohertz framerates. The resulting data, where particles are continuously detected and do not displace much between observations, thereby do not require complex linking algorithms. Moreover, while these measurements offer more details into the short-term diffusion behaviour of the tracked particles, they are also subject to the influence of localisation uncertainties, which are often underestimated by conventional analysis pipelines. we thus developed a Python library, under the name of TRAIT2D (Tracking Analysis Toolbox – 2D version), in order to track particle diffusion at high sampling rates, and analyse the resulting trajectories with an innovative approach. The data analysis pipeline introduced is more localisation-uncertainty aware, and also selects the most appropriate diffusion model for the data provided on a statistical basis. A trajectory simulation platform also allows the user to handily generate trajectories and even synthetic time-lapses to test alternative tracking algorithms and data analysis approaches. A high degree of customisation for the analysis pipeline, for example with the introduction of different diffusion modes, is possible from the source code. Finally, the presence of graphical user interfaces lowers the access barrier for users with little to no programming experience.