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    corr2D: Implementation of Two-Dimensional Correlation Analysis in R
    (Los Angeles : UCLA, 2019) Geitner, Robert; Fritzsch, Robby; Bocklitz, Thomas W.; Popp, Jürgen
    In the package corr2D two-dimensional correlation analysis is implemented in R. This paper describes how two-dimensional correlation analysis is done in the package and how the mathematical equations are translated into R code. The paper features a simple tutorial with executable code for beginners, insight into the calculations done before the correlation analysis, a detailed look at the parallelization of the fast Fourier transformation based correlation analysis and a speed test of the calculation. The package corr2D offers the possibility to preprocess, correlate and postprocess spectroscopic data using exclusively the R language. Thus, corr2D is a welcome addition to the toolbox of spectroscopists and makes two-dimensional correlation analysis more accessible and transparent.
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    Statistical parametric maps for functional MRI experiments in R: The package fmri
    (Los Angeles : UCLA, 2011) Tabelow, K.; Polzehl, J.
    The purpose of the package fmri is the analysis of single subject functional magnetic resonance imaging (fMRI) data. It provides fMRI analysis from time series modeling by a linear model to signal detection and publication quality images. Specifically, it implements structural adaptive smoothing methods with signal detection for adaptive noise reduction which avoids blurring of activation areas. Within this paper we describe the complete pipeline for fMRI analysis using fmri. We describe data reading from various medical imaging formats and the linear modeling used to create the statistical parametric maps. We review the rationale behind the structural adaptive smoothing algorithms and explain their usage from the package fmri. We demonstrate the results of such analysis using two experimental datasets. Finally, we report on the usage of a graphical user interface for some of the package functions.