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- ItemTowards on-site testing of Phytophthora species(Cambridge : RSC Publ., 2014) Schwenkbier, Lydia; Pollok, Sibyll; König, Stephan; Urban, Matthias; Werres, Sabine; Cialla-May, Dana; Weber, Karina; Popp, JürgenRapid detection and accurate identification of plant pathogens in the field is an ongoing challenge. In this study, we report for the first time on the development of a helicase-dependent isothermal amplification (HDA) in combination with on-chip hybridization for the detection of selected Phytophthora species. The HDA approach allows efficient amplification of the yeast GTP-binding protein (Ypt1) target gene region at one constant temperature in a miniaturized heating device. The assay's specificity was determined by on-chip DNA hybridization and subsequent silver nanoparticle deposition. The silver deposits serve as stable endpoint signals that enable the visual as well as the electrical readout. Our promising results point to the direction of a near future on-site application of the combined techniques for a reliable detection of Phytophthora species.
- ItemEvaluation of colloids and activation agents for determination of melamine using UV-SERS(Washington, DC : American Chemical Society, 2012) Kämmer, E.; Dörfer, T.; Csáki, A.; Schumacher, W.; Da Costa Filho, P.A.; Tarcea, N.; Fritzsche, W.; Rösch, P.; Schmitt, M.; Popp, J.UV-SERS measurements offer a great potential for environmental or food (detection of food contaminats) analytics. Here, the UV-SERS enhancement potential of various kinds of metal colloids, such as Pd, Pt, Au, Ag, Au-Ag core-shell, and Ag-Au core-shell with different shapes and sizes, were studied using melamine as a test molecule. The influence of different activation (KF, KCl, KBr, K 2SO 4) agents onto the SERS activity of the nanomaterials was investigated, showing that the combination of a particular nanoparticle with a special activation agent is extremely crucial for the observed SERS enhancement. In particular, the size dependence of spherical nanoparticles of one particular metal on the activator has been exploited. By doing so, it could be shown that the SERS enhancement increases or decreases for increasing or decreasing size of a nanoparticle, respectively. Overall, the presented results demonstrate the necessity to adjust the nanoparticle size and the activation agent for different experiments in order to achieve the best possible UV-SERS results.
- ItemGold-reinforced silver nanoprisms on optical fiber tapers - A new base for high precision sensing(New York : American Institute of Physics, 2016) Wieduwilt, Torsten; Zeisberger, M.; Thiele, M.; Doherty, B.; Chemnitz, M.; Csaki, A.; Fritzsche, W.; Schmidt, M.A.Due to their unique optical properties, metallic nanoparticles offer a great potential for important applications such as disease diagnostics, demanding highly integrated device solutions with large refractive index sensitivity. Here we introduce a new type of monolithic localized surface plasmon resonance (LSPR) waveguide sensor based on the combination of an adiabatic optical fiber taper and a high-density ensemble of immobilized gold-reinforced silver nanoprisms, showing sensitivities up to 900 nm/RIU. This result represents the highest value reported so far for a fiber optic sensor using the LSPR effect and exceeds the corresponding value of the bulk solution by a factor of two. The plasmonic resonance is efficiently excited via the evanescent field of the propagating taper mode, leading to pronounced transmission dips (−20 dB). The particle density is so high (approx. 210 particle/μm2) that neighboring particles are able to interact, boosting the sensitivity, as confirmed by qualitative infinite element simulations. We additionally introduce a qualitative model explaining the interaction of plasmon resonance and taper mode on the basis of light extinction, allowing extracting key parameters of the plasmonic taper (e.g., modal attenuation). Due to the monolithic design and the extremely high sensitivity we expect our finding to be relevant in fields such as biomedicine, disease diagnostics, and molecular sensing.
- ItemLocal protonation control using plasmonic activation(Cambridge : RSC, 2001) Singh, P.; Deckert, V.Localized protonation of 4-mercaptopyridine (4-MPY), activated by light in the presence of silver nanoparticles is monitored under ambient conditions using surface-enhanced Raman scattering (SERS) and tip-enhanced Raman scattering (TERS). The reaction can be controlled by the excitation wavelength and the atmospheric conditions, thus, providing a tool for site-specific control of protonation.
- ItemThe morphology of silver nanoparticles prepared by enzyme-induced reduction(Frankfurt, M. : Beilstein-Institut zur Förderung der Chemischen Wissenschaften, 2012) Schneidewind, H.; Schüler, T.; Strelau, K.K.; Weber, K.; Cialla, D.; Diegel, M.; Mattheis, R.; Berger, A.; Möller, R.; Popp, J.Silver nanoparticles were synthesized by an enzyme-induced growth process on solid substrates. In order to customize the enzymatically grown nanoparticles (EGNP) for analytical applications in biomolecular research, a detailed study was carried out concerning the time evolution of the formation of the silver nanoparticles, their morphology, and their chemical composition. Therefore, silvernanoparticle films of different densities were investigated by using scanning as well as transmission electron microscopy to examine their structure. Cross sections of silver nanoparticles, prepared for analysis by transmission electron microscopy were additionally studied by energy-dispersive X-ray spectroscopy in order to probe their chemical composition. The surface coverage of substrates with silver nanoparticles and the maximum particle height were determined by Rutherford backscattering spectroscopy. Variations in the silver-nanoparticle films depending on the conditions during synthesis were observed. After an initial growth state the silver nanoparticles exhibit the so-called desert-rose or nanoflower-like structure. This complex nanoparticle structure is in clear contrast to the auto-catalytically grown spherical particles, which maintain their overall geometrical appearance while increasing their diameter. It is shown, that the desert-rose-like silver nanoparticles consist of single-crystalline plates of pure silver. The surface-enhanced Raman spectroscopic (SERS) activity of the EGNP structures is promising due to the exceptionally rough surface structure of the silver nanoparticles. SERS measurements of the vitamin riboflavin incubated on the silver nanoparticles are shown as an exemplary application for quantitative analysis.
- ItemLabel-free detection of Phytophthora ramorum using surface-enhanced Raman spectroscopy(Cambridge : Soc., 2015) Yüksel, Sezin; Schwenkbier, Lydia; Pollok, Sibyll; Weber, Karina; Cialla-May, Dana; Popp, JürgenIn this study, we report on a novel approach for the label-free and species-specific detection of the plant pathogen Phytophthora ramorum from real samples using surface enhanced Raman scattering (SERS). In this context, we consider the entire analysis chain including sample preparation, DNA isolation, amplification and hybridization on SERS substrate-immobilized adenine-free capture probes. Thus, the SERS-based detection of target DNA is verified by the strong spectral feature of adenine which indicates the presence of hybridized target DNA. This property was realized by replacing adenine moieties in the species-specific capture probes with 2-aminopurine. In the case of the matching capture and target sequence, the characteristic adenine peak serves as an indicator for specific DNA hybridization. Altogether, this is the first assay demonstrating the detection of a plant pathogen from an infected plant material by label-free SERS employing DNA hybridization on planar SERS substrates consisting of silver nanoparticles.