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- ItemThree-Dimensional Composition and Electric Potential Mapping of III–V Core–Multishell Nanowires by Correlative STEM and Holographic Tomography(Washington, DC : ACS Publ., 2018-7-13) Wolf, Daniel; Hübner, René; Niermann, Tore; Sturm, Sebastian; Prete, Paola; Lovergine, Nico; Büchner, Bernd; Lubk, AxelThe nondestructive characterization of nanoscale devices, such as those based on semiconductor nanowires, in terms of functional potentials is crucial for correlating device properties with their morphological/materials features, as well as for precisely tuning and optimizing their growth process. Electron holographic tomography (EHT) has been used in the past to reconstruct the total potential distribution in three-dimension but hitherto lacked a quantitative approach to separate potential variations due to chemical composition changes (mean inner potential, MIP) and space charges. In this Letter, we combine and correlate EHT and high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) tomography on an individual ⟨111⟩ oriented GaAs–AlGaAs core–multishell nanowire (NW). We obtain excellent agreement between both methods in terms of the determined Al concentration within the AlGaAs shell, as well as thickness variations of the few nanometer thin GaAs shell acting as quantum well tube. Subtracting the MIP determined from the STEM tomogram, enables us to observe functional potentials at the NW surfaces and at the Au–NW interface, both ascribed to surface/interface pinning of the semiconductor Fermi level.
- ItemThree-Dimensional Imaging of Magnetic Domains with Neutron Grating Interferometry(Amsterdam [u.a.] : Elsevier, 2015) Manke, I.; Kardjilov, N.; Schäfer, R.; Hilger, A.; Grothausmann, R.; Strobl, M.; Dawson, M.; Grünzweig, Ch.; Tötzke, Ch.; David, Ch.; Kupsch, A.; Lange, A.; Hentschel, M.P.; Banhart, J.This paper gives a brief overview on3D imaging of magnetic domains with shearing grating neutron tomography. We investigated the three-dimensional distribution of magnetic domain walls in the bulk of a wedge-shaped FeSi single crystal. The width of the magnetic domains wasanalyzed at different locations within the crystal. Magnetic domains close to the tip of the wedge are much smaller than in the bulk. Furthermore, the three-dimensional shape of individual domains wasinvestigated. We discuss prospects and limitations of the applied measurement technique.
- ItemMonitoring hillslope moisture dynamics with surface ERT for enhancing spatial significance of hydrometric point measurements(Munich : EGU, 2015) Hübner, R.; Heller, K.; Günther, T.; Kleber, A.Besides floodplains, hillslopes are basic units that mainly control water movement and flow pathways within catchments of subdued mountain ranges. The structure of their shallow subsurface affects water balance, e.g. infiltration, retention, and runoff. Nevertheless, there is still a gap in the knowledge of the hydrological dynamics on hillslopes, notably due to the lack of generalization and transferability. This study presents a robust multi-method framework of electrical resistivity tomography (ERT) in addition to hydrometric point measurements, transferring hydrometric data into higher spatial scales to obtain additional patterns of distribution and dynamics of soil moisture on a hillslope. A geoelectrical monitoring in a small catchment in the eastern Ore Mountains was carried out at weekly intervals from May to December 2008 to image seasonal moisture dynamics on the hillslope scale. To link water content and electrical resistivity, the parameters of Archie's law were determined using different core samples. To optimize inversion parameters and methods, the derived spatial and temporal water content distribution was compared to tensiometer data. The results from ERT measurements show a strong correlation with the hydrometric data. The response is congruent to the soil tension data. Water content calculated from the ERT profile shows similar variations as that of water content from soil moisture sensors. Consequently, soil moisture dynamics on the hillslope scale may be determined not only by expensive invasive punctual hydrometric measurements, but also by minimally invasive time-lapse ERT, provided that pedo-/petrophysical relationships are known. Since ERT integrates larger spatial scales, a combination with hydrometric point measurements improves the understanding of the ongoing hydrological processes and better suits identification of heterogeneities.
- ItemWhole-Cell Analysis of Low-Density Lipoprotein Uptake by Macrophages Using STEM Tomography(San Francisco, CA : Public Library of Science, 2013) Baudoin, J.-P.; Jerome, W.G.; Kübel, C.; de Jonge, N.Nanoparticles of heavy materials such as gold can be used as markers in quantitative electron microscopic studies of protein distributions in cells with nanometer spatial resolution. Studying nanoparticles within the context of cells is also relevant for nanotoxicological research. Here, we report a method to quantify the locations and the number of nanoparticles, and of clusters of nanoparticles inside whole eukaryotic cells in three dimensions using scanning transmission electron microscopy (STEM) tomography. Whole-mount fixed cellular samples were prepared, avoiding sectioning or slicing. The level of membrane staining was kept much lower than is common practice in transmission electron microscopy (TEM), such that the nanoparticles could be detected throughout the entire cellular thickness. Tilt-series were recorded with a limited tilt-range of 80° thereby preventing excessive beam broadening occurring at higher tilt angles. The 3D locations of the nanoparticles were nevertheless determined with high precision using computation. The obtained information differed from that obtained with conventional TEM tomography data since the nanoparticles were highlighted while only faint contrast was obtained on the cellular material. Similar as in fluorescence microscopy, a particular set of labels can be studied. This method was applied to study the fate of sequentially up-taken low-density lipoprotein (LDL) conjugated to gold nanoparticles in macrophages. Analysis of a 3D reconstruction revealed that newly up-taken LDL-gold was delivered to lysosomes containing previously up-taken LDL-gold thereby forming onion-like clusters.
- ItemImpacts of a capillary barrier on infiltration and subsurface stormflow in layered slope deposits monitored with 3-D ERT and hydrometric measurements(Munich : EGU, 2017) Hübner, Rico; Günther, Thomas; Heller, Katja; Noell, Ursula; Kleber, ArnoIdentifying principles of water movement in the shallow subsurface is crucial for adequate process-based hydrological models. Hillslopes are the essential interface for water movement in catchments. The shallow subsurface on slopes typically consists of different layers with varying characteristics. The aim of this study was to draw conclusions about the infiltration behaviour, to identify water flow pathways and derive some general interpretations for the validity of the water movement on a hillslope with periglacial slope deposits (cover beds), where the layers differ in their sedimentological and hydrological properties. Especially the described varying influence of the basal layer (LB) as an impeding layer on the one hand and as a remarkable pathway for rapid subsurface stormflow on the other. We used a time lapse 3-D electrical resistivity tomography (ERT) approach combined with punctual hydrometric data to trace the spreading and the progression of an irrigation plume in layered slope deposits during two irrigation experiments. This multi-technical approach enables us to connect the high spatial resolution of the 3-D ERT with the high temporal resolution of the hydrometric devices. Infiltration through the uppermost layer was dominated by preferential flow, whereas the water flow in the deeper layers was mainly matrix flow. Subsurface stormflow due to impeding characteristic of the underlying layer occurs in form of "organic layer interflow" and at the interface to the first basal layer (LB1). However, the main driving factor for subsurface stormflow is the formation of a capillary barrier at the interface to the second basal layer (LB2). The capillary barrier prevents water from entering the deeper layer under unsaturated conditions and diverts the seepage water according to the slope inclination. With higher saturation, the capillary barrier breaks down and water reaches the highly conductive deeper layer. This highlights the importance of the capillary barrier effect for the prevention or activation of different flow pathways under variable hydrological conditions.
- ItemThree-dimensional monitoring of soil water content in a maize field using Electrical Resistivity Tomography(Munich : EGU, 2013) Beff, L.; Günther, T.; Vandoorne, B.; Couvreur, V.; Javaux, M.A good understanding of the soil water content (SWC) distribution at the field scale is essential to improve the management of water, soil and crops. Recent studies proved that Electrical Resistivity Tomography (ERT) opens interesting perspectives in the determination of the SWC distribution in 3 dimensions (3-D). This study was conducted (i) to check and validate how ERT is able to monitor SWC distribution in a maize field during the late growing season; and (ii) to investigate how maize plants and rainfall affect the dynamics of SWC distribution. Time Domain Reflectometry (TDR) measurements were used to validate ERT-inverted SWC values. Evolution of water mass balance was also calculated to check whether ERT was capable of giving a reliable estimate of soil water stock evolution. It is observed that ERT was able to give the same average SWC as TDR (R2 = 0.98). In addition, ERT gives better estimates of the water stock than TDR thanks to its higher spatial resolution. The high resolution of ERT measurements also allows for the discrimination of SWC heterogeneities. The SWC distribution showed that alternation of maize rows and inter-rows was the main influencing factor of the SWC distribution. The drying patterns were linked to the root profiles, with drier zones under the maize rows. During short periods, with negligible rainfall, the SWC decrease took place mainly in the two upper soil horizons and in the inter-row area. In contrast, rainfall increased the SWC mostly under the maize rows and in the upper soil layer. Nevertheless, the total amount of rainfall during the growing season was not sufficient to modify the SWC patterns induced by the maize rows. During the experimental time, there was hardly any SWC redistribution from maize rows to inter-rows. Yet, lateral redistribution from inter-rows to maize rows induced by potential gradient generates SWC decrease in the inter-row area and in the deeper soil horizons.
- ItemLarge-scale electrical resistivity tomography in the Cheb Basin (Eger Rift) at an International Continental Drilling Program (ICDP) monitoring site to image fluid-related structures(Göttingen : Copernicus Publ., 2019) Nickschick, Tobias; Flechsig, Christina; Mrlina, Jan; Oppermann, Frank; Löbig, Felix; Günther, ThomasThe Cheb Basin, a region of ongoing swarm earthquake activity in the western Czech Republic, is characterized by intense carbon dioxide degassing along two known fault zones – the N–S-striking Počatky–Plesná fault zone (PPZ) and the NW–SE-striking Mariánské Lázně fault zone (MLF). The fluid pathways for the ascending CO2 of mantle origin are one of the subjects of the International Continental Scientific Drilling Program (ICDP) project “Drilling the Eger Rift” in which several geophysical surveys are currently being carried out in this area to image the topmost hundreds of meters to assess the structural situation, as existing boreholes are not sufficiently deep to characterize it. As electrical resistivity is a sensitive parameter to the presence of conductive rock fractions as liquid fluids, clay minerals, and also metallic components, a large-scale dipole–dipole experiment using a special type of electric resistivity tomography (ERT) was carried out in June 2017 in order to image fluid-relevant structures. We used permanently placed data loggers for voltage measurements in conjunction with moving high-power current sources to generate sufficiently strong signals that could be detected all along the 6.5 km long profile with 100 and 150 m dipole spacings. After extensive processing of time series for voltage and current using a selective stacking approach, the pseudo-section is inverted, which results in a resistivity model that allows for reliable interpretations depths of up than 1000 m. The subsurface resistivity image reveals the deposition and transition of the overlying Neogene Vildštejn and Cypris formations, but it also shows a very conductive basement of phyllites and granites that can be attributed to high salinity or rock alteration by these fluids in the tectonically stressed basement. Distinct, narrow pathways for CO2 ascent are not observed with this kind of setup, which hints at wide degassing structures over several kilometers within the crust instead. We also observed gravity and GPS data along this profile in order to constrain ERT results. A gravity anomaly of ca. −9 mGal marks the deepest part of the Cheb Basin where the ERT profile indicates a large accumulation of conductive rocks, indicating a very deep weathering or alteration of the phyllitic basement due to the ascent of magmatic fluids such as CO2. We propose a conceptual model in which certain lithologic layers act as caps for the ascending fluids based on stratigraphic records and our results from this experiment, providing a basis for future drillings in the area aimed at studying and monitoring fluids.
- ItemClassification and quantification of pore shapes in sandstone reservoir rocks with 3-D X-ray micro-computed tomography(Göttingen : Copernicus Publ., 2016) Schmitt, Mayka; Halisch, Matthias; Müller, Cornelia; Fernandes, Celso PeresRecent years have seen a growing interest in the characterization of the pore morphologies of reservoir rocks and how the spatial organization of pore traits affects the macro behavior of rock–fluid systems. With the availability of 3-D high-resolution imaging, such as x-ray micro-computed tomography (µ-CT), the detailed quantification of particle shapes has been facilitated by progress in computer science. Here, we show how the shapes of irregular rock particles (pores) can be classified and quantified based on binary 3-D images. The methodology requires the measurement of basic 3-D particle descriptors (length, width, and thickness) and a shape classification that involves the similarity of artificial objects, which is based on main pore network detachments and 3-D sample sizes. Two main pore components were identified from the analyzed volumes: pore networks and residual pore ganglia. A watershed algorithm was applied to preserve the pore morphology after separating the main pore networks, which is essential for the pore shape characterization. The results were validated for three sandstones (S1, S2, and S3) from distinct reservoirs, and most of the pore shapes were found to be plate- and cube-like, ranging from 39.49 to 50.94 % and from 58.80 to 45.18 % when the Feret caliper descriptor was investigated in a 10003 voxel volume. Furthermore, this study generalizes a practical way to correlate specific particle shapes, such as rods, blades, cuboids, plates, and cubes to characterize asymmetric particles of any material type with 3-D image analysis.
- ItemX-ray computed tomography investigation of structures in Opalinus Clay fromlarge-scale to small-scale after mechanical testing(Göttingen : Copernicus Publ., 2016) Kaufhold, Annette; Halisch, Matthias; Zacher, Gerhard; Kaufhold, StephanIn the past years X-ray computed tomography (CT) has became more and more common for geoscientific applications and is used from the µm-scale (e.g. for investigations of microfossils or pore-scale structures) up to the dm-scale (full drill cores or soil columns). In this paper we present results from CT imaging and mineralogical investigations of an Opalinus Clay core on different scales and different regions of interest, emphasizing especially the 3-D evaluation and distribution of cracks and their impact on mechanical testing of such material. Enhanced knowledge of the testing behaviour of the Opalinus Clay is of great interest, especially since this material is considered for a long-term radioactive waste disposal and storage facility in Switzerland. Hence, results are compared regarding the mineral (i.e. phase) contrast resolution, the spatial resolution, and the overall scanning speed. With this extensive interdisciplinary scale-down approach it has been possible to characterize the general fracture propagation in comparison to mineralogical and textural features of the Opalinus Clay. Additionally, and as far as we know, a so-called mylonitic zone, located at an intersect of two main fractures, has been observed for the first time for an experimentally deformed Opalinus sample. The multi-scale results are in good accordance to data from naturally deformed Opalinus Clay samples, which enables us to perform systematical research under controlled laboratory conditions. Accompanying 3-D imaging greatly enhances the capability of data interpretation and assessment of such a material.
- ItemPore-scale tomography and imaging: applications, techniques and recommended practice(Göttingen : Copernicus Publ., 2016) Halisch, Matthias; Steeb, Holger; Henkel, Steven; Krawczyk, Charlotte M.[No abstract available]