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- ItemChallenges in network science: Applications to infrastructures, climate, social systems and economics(Heidelberg : Springer, 2012) Havlin, S.; Kenett, D.Y.; Ben-Jacob, E.; Bunde, A.; Cohen, R.; Hermann, H.; Kantelhardt, J.W.; Kertész, J.; Kirkpatrick, S.; Kurths, J.; Portugali, J.; Solomon, S.Network theory has become one of the most visible theoretical frameworks that can be applied to the description, analysis, understanding, design and repair of multi-level complex systems. Complex networks occur everywhere, in man-made and human social systems, in organic and inorganic matter, from nano to macro scales, and in natural and anthropogenic structures. New applications are developed at an ever-increasing rate and the promise for future growth is high, since increasingly we interact with one another within these vital and complex environments. Despite all the great successes of this field, crucial aspects of multi-level complex systems have been largely ignored. Important challenges of network science are to take into account many of these missing realistic features such as strong coupling between networks (networks are not isolated), the dynamics of networks (networks are not static), interrelationships between structure, dynamics and function of networks, interdependencies in given networks (and other classes of links, including different signs of interactions), and spatial properties (including geographical aspects) of networks. This aim of this paper is to introduce and discuss the challenges that future network science needs to address, and how different disciplines will be accordingly affected.
- ItemDynamics and collapse in a power system model with voltage variation: The damping effect(San Francisco, CA : Public Library of Science (PLoS), 2016) Ma, J.; Sun, Y.; Yuan, X.; Kurths, J.; Zhan, M.
- ItemLocal difference measures between complex networks for dynamical system model evaluation(San Francisco, CA : Public Library of Science (PLoS), 2015) Lange, S.; Donges, J.F.; Volkholz, J.; Kurths, J.
- ItemRecurrence networks-a novel paradigm for nonlinear time series analysis(College Park, MD : Institute of Physics Publishing, 2010) Donner, R.V.; Zou, Y.; Donges, J.F.; Marwan, N.; Kurths, J.This paper presents a new approach for analysing the structural properties of time series from complex systems. Starting from the concept of recurrences in phase space, the recurrence matrix of a time series is interpreted as the adjacency matrix of an associated complex network, which links different points in time if the considered states are closely neighboured in phase space. In comparison with similar network-based techniques the new approach has important conceptual advantages, and can be considered as a unifying framework for transforming time series into complex networks that also includes other existing methods as special cases. It has been demonstrated here that there are fundamental relationships between many topological properties of recurrence networks and different nontrivial statistical properties of the phase space density of the underlying dynamical system. Hence, this novel interpretation of the recurrence matrix yields new quantitative characteristics (such as average path length, clustering coefficient, or centrality measures of the recurrence network) related to the dynamical complexity of a time series, most of which are not yet provided by other existing methods of nonlinear time series analysis. © IOP Publishing Ltd and Deutsche Physikalische Gesellschaft.
- ItemAn electronic analog of synthetic genetic networks(San Francisco, CA : Public Library of Science (PLoS), 2011) Hellen, E.H.; Volkov, E.; Kurths, J.; Dana, S.K.An electronic analog of a synthetic genetic network known as the repressilator is proposed. The repressilator is a synthetic biological clock consisting of a cyclic inhibitory network of three negative regulatory genes which produces oscillations in the expressed protein concentrations. Compared to previous circuit analogs of the repressilator, the circuit here takes into account more accurately the kinetics of gene expression, inhibition, and protein degradation. A good agreement between circuit measurements and numerical prediction is observed. The circuit allows for easy control of the kinetic parameters thereby aiding investigations of large varieties of potential dynamics.
- ItemAnalysing dynamical behavior of cellular networks via stochastic bifurcations(San Francisco, CA : Public Library of Science (PLoS), 2011) Zakharova, A.; Kurths, J.; Vadivasova, T.; Koseska, A.The dynamical structure of genetic networks determines the occurrence of various biological mechanisms, such as cellular differentiation. However, the question of how cellular diversity evolves in relation to the inherent stochasticity and intercellular communication remains still to be understood. Here, we define a concept of stochastic bifurcations suitable to investigate the dynamical structure of genetic networks, and show that under stochastic influence, the expression of given proteins of interest is defined via the probability distribution of the phase variable, representing one of the genes constituting the system. Moreover, we show that under changing stochastic conditions, the probabilities of expressing certain concentration values are different, leading to different functionality of the cells, and thus to differentiation of the cells in the various types.
- ItemNoise-Aided Logic in an Electronic Analog of Synthetic Genetic Networks(San Francisco, CA : Public Library of Science (PLoS), 2013) Hellen, E.H.; Dana, S.K.; Kurths, J.; Kehler, E.; Sinha, S.We report the experimental verification of noise-enhanced logic behaviour in an electronic analog of a synthetic genetic network, composed of two repressors and two constitutive promoters. We observe good agreement between circuit measurements and numerical prediction, with the circuit allowing for robust logic operations in an optimal window of noise. Namely, the input-output characteristics of a logic gate is reproduced faithfully under moderate noise, which is a manifestation of the phenomenon known as Logical Stochastic Resonance. The two dynamical variables in the system yield complementary logic behaviour simultaneously. The system is easily morphed from AND/NAND to OR/NOR logic.
- ItemRestoration of rhythmicity in diffusively coupled dynamical networks(London : Nature Publishing Group, 2015) Zou, W.; Senthilkumar, D.V.; Nagao, R.; Kiss, I.Z.; Tang, Y.; Koseska, A.; Duan, J.; Kurths, J.
- ItemStability threshold approach for complex dynamical systems(Bristol : Institute of Physics Publishing, 2016) Klinshov, V.V.; Nekorkin, V.I.; Kurths, J.
- ItemGeneral scaling of maximum degree of synchronization in noisy complex networks(Bristol : Institute of Physics Publishing, 2014) Traxl, D.; Boers, N.; Kurths, J.The effects of white noise and global coupling strength on the maximum degree of synchronization in complex networks are explored. We perform numerical simulations of generic oscillator models with both linear and non-linear coupling functions on a broad spectrum of network topologies. The oscillator models include the Fitzhugh-Nagumo model, the Izhikevich model and the Kuramoto phase oscillator model. The network topologies range from regular, random and highly modular networks to scale-free and small-world networks, with both directed and undirected edges. We then study the dependency of the maximum degree of synchronization on the global coupling strength and the noise intensity. We find a general scaling of the synchronizability, and quantify its validity by fitting a regression model to the numerical data.