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- ItemBiochar research activities and their relation to development and environmental quality. A meta-analysis(Berlin ; Heidelberg : Springer, 2017-6-6) Mehmood, Khalid; Chávez Garcia, Elizabeth; Schirrmann, Michael; Ladd, Brenton; Kammann, Claudia; Wrage-Mönnig, Nicole; Siebe, Christina; Estavillo, Jose M.; Fuertes-Mendizabal, Teresa; Cayuela, Mariluz; Sigua, Gilbert; Spokas, Kurt; Cowie, Annette L.; Novak, Jeff; Ippolito, James A.; Borchard, NilsBiochar is the solid product that results from pyrolysis of organic materials. Its addition to highly weathered soils changes physico-chemical soil properties, improves soil functions and enhances crop yields. Highly weathered soils are typical of humid tropics where agricultural productivity is low and needs to be raised to reduce human hunger and poverty. However, impact of biochar research on scientists, politicians and end-users in poor tropical countries remains unknown; assessing needs and interests on biochar is essential to develop reliable knowledge transfer/translation mechanisms. The aim of this publication is to present results of a meta-analysis conducted to (1) survey global biochar research published between 2010 and 2014 to assess its relation to human development and environmental quality, and (2) deduce, based on the results of this analysis, priorities required to assess and promote the role of biochar in the development of adapted and sustainable agronomic methods. Our main findings reveal for the very first time that: (1) biochar research associated with less developed countries focused on biochar production technologies (26.5 ± 0.7%), then on biochars’ impact on chemical soil properties (18.7 ± 1.2%), and on plant productivity (17.1 ± 2.6%); (2) China dominated biochar research activities among the medium developed countries focusing on biochar production technologies (26.8 ± 0.5%) and on use of biochar as sorbent for organic and inorganic compounds (29.1 ± 0.4%); and (3) the majority of biochar research (69.0±2.9%) was associated with highly developed countries that are able to address a higher diversity of questions. Evidently, less developed countries are eager to improve soil fertility and agricultural productivity, which requires transfer and/or translation of biochar knowledge acquired in highly developed countries. Yet, improving local research capacities and encouraging synergies across scientific disciplines and countries are crucial to foster development of sustainable agronomy in less developed countries. © 2017, The Author(s).
- ItemZielflächenorientierte, präzise Echtzeit-Fungizidapplikation in Getreide(Darmstadt : KTBL, 2015) Dammer, Karl-Heinz; Hamdorf, André; Ustyuzhanin, Anton; Schirrmann, Michael; Leithold, Peer; Leithold, Hermann; Volk, Thomas; Tackenberg, MariaIm Rahmen eines Verbundprojektes wurden Echtzeit-Applikationstechnologien mit berührungslosen Sensoren für präzise Fungizid-Spritzungen in Getreide entwickelt. Das Entscheidungshilfe- System proPlant expert.classic bzw. die Internetversion proPlant expert.com (proPlant GmbH) empfiehlt geeignete Fungizide und Dosierungen für ein bestimmtes Infektionsszenario der acht wichtigsten Blatt- und Ährenkrankheiten von Winterweizen. Das Precision- Farming-Modul „Fungizid“, welches auf dem Terminal in der Traktorenkabine läuft, steuert das präzise Spritzverfahren. Das Modul bestimmt die lokale Zielapplikationsmenge während des Spritzens durch Nutzung des lokalen Ultraschallsensorwerts als Eingabeparameter. In den Jahren 2013 und 2014 wurden Feldversuche in Winterweizen durchgeführt, um die Beziehung zwischen den Sensorwerten (Ultraschall- und Kamerasensor) und den Pflanzenparametern Pflanzenoberfläche (Leaf Area Index, LAI) sowie Biomasse zu analysieren. Diese sind für einen örtlich angepassten variablen Fungizideinsatz zur Bemessung der Spritzmenge wichtig. Die Messungen wurden mehrmals während der Vegetationsperiode an visuell ausgewählten Stichprobenpunkten entsprechend der unterschiedlichen Bestandsdichte durchgeführt. Nach Änderungen an der Sensortechnik konnten für 2014 signifikante lineare Regressionsmodelle zur Beschreibung der Beziehung zwischen den Sensorwerten und den zwei Pflanzenparametern LAI sowie Biomasse gefunden werden.
- ItemDeep Learning Object Detection for Image Analysis of Cherry Fruit Fly (Rhagoletis cerasi L.) on Yellow Sticky Traps(Berlin ; Heidelberg : Springer, 2022) Salamut, Christian; Kohnert, Iris; Landwehr, Niels; Pflanz, Michael; Schirrmann, Michael; Zare, MohammadInsect populations appear with a high spatial, temporal and type-specific diversity in orchards. One of the many monitoring tools for pest management is the manual assessment of sticky traps. However, this type of assessment is laborious and time-consuming so that only a few locations can be controlled in an orchard. The aim of this study is to test state-of-the art object detection algorithms from deep learning to automatically detect cherry fruit flies (Rhagoletis cerasi), a common insect pest in cherry plantations, within images from yellow sticky traps. An image annotation database was built with images taken from yellow sticky traps with more than 1600 annotated cherry fruit flies. For better handling in the computational algorithms, the images were augmented to smaller ones by the known image preparation methods “flipping” and “cropping” before performing the deep learning. Five deep learning image recognition models were tested including Faster Region-based Convolutional Neural Network (R-CNN) with two different methods of pretraining, Single Shot Detector (SSD), RetinaNet, and You Only Look Once version 5 (YOLOv5). R‑CNN and RetinaNet models outperformed other ones with a detection average precision of 0.9. The results indicate that deep learning can act as an integral component of an automated system for high-throughput assessment of pest insects in orchards. Therefore, this can reduce the time for repetitive and laborious trap assessment but also increase the observed amount of sticky traps
- ItemImproving Deep Learning-based Plant Disease Classification with Attention Mechanism(Berlin ; Heidelberg : Springer, 2022) Alirezazadeh, Pendar; Schirrmann, Michael; Stolzenburg, FriederIn recent years, deep learning-based plant disease classification has been widely developed. However, it is challenging to collect sufficient annotated image data to effectively train deep learning models for plant disease recognition. The attention mechanism in deep learning assists the model to focus on the informative data segments and extract the discriminative features of inputs to enhance training performance. This paper investigates the Convolutional Block Attention Module (CBAM) to improve classification with CNNs, which is a lightweight attention module that can be plugged into any CNN architecture with negligible overhead. Specifically, CBAM is applied to the output feature map of CNNs to highlight important local regions and extract more discriminative features. Well-known CNN models (i.e. EfficientNetB0, MobileNetV2, ResNet50, InceptionV3, and VGG19) were applied to do transfer learning for plant disease classification and then fine-tuned by a publicly available plant disease dataset of foliar diseases in pear trees called DiaMOS Plant. Amongst others, this dataset contains 3006 images of leaves affected by different stress symptoms. Among the tested CNNs, EfficientNetB0 has shown the best performance. EfficientNetB0+CBAM has outperformed EfficientNetB0 and obtained 86.89% classification accuracy. Experimental results show the effectiveness of the attention mechanism to improve the recognition accuracy of pre-trained CNNs when there are few training data.
- ItemSoil pH mapping with an on-the-go sensor(Basel : MDPI, 2011) Schirrmann, Michael; Gebbers, Robin; Kramer, Eckart; Seidel, JanSoil pH is a key parameter for crop productivity, therefore, its spatial variation should be adequately addressed to improve precision management decisions. Recently, the Veris pH ManagerTM, a sensor for high-resolution mapping of soil pH at the field scale, has been made commercially available in the US. While driving over the field, soil pH is measured on-the-go directly within the soil by ion selective antimony electrodes. The aim of this study was to evaluate the Veris pH ManagerTM under farming conditions in Germany. Sensor readings were compared with data obtained by standard protocols of soil pH assessment. Experiments took place under different scenarios: (a) controlled tests in the lab, (b) semicontrolled test on transects in a stop-and-go mode, and (c) tests under practical conditions in the field with the sensor working in its typical on-the-go mode. Accuracy issues, problems, options, and potential benefits of the Veris pH ManagerTM were addressed. The tests demonstrated a high degree of linearity between standard laboratory values and sensor readings. Under practical conditions in the field (scenario c), the measure of fit (r2) for the regression between the on-the-go measurements and the reference data was 0.71, 0.63, and 0.84, respectively. Field-specific calibration was necessary to reduce systematic errors. Accuracy of the on-the-go maps was considerably higher compared with the pH maps obtained by following the standard protocols, and the error in calculating lime requirements was reduced by about one half. However, the system showed some weaknesses due to blockage by residual straw and weed roots. If these problems were solved, the on-the-go sensor investigated here could be an efficient alternative to standard sampling protocols as a basis for liming in Germany.
- ItemUAV Oblique Imagery with an Adaptive Micro-Terrain Model for Estimation of Leaf Area Index and Height of Maize Canopy from 3D Point Clouds(Basel : MDPI, 2022) Li, Minhui; Shamshiri, Redmond R.; Schirrmann, Michael; Weltzien, Cornelia; Shafian, Sanaz; Laursen, Morten StigaardLeaf area index (LAI) and height are two critical measures of maize crops that are used in ecophysiological and morphological studies for growth evaluation, health assessment, and yield prediction. However, mapping spatial and temporal variability of LAI in fields using handheld tools and traditional techniques is a tedious and costly pointwise operation that provides information only within limited areas. The objective of this study was to evaluate the reliability of mapping LAI and height of maize canopy from 3D point clouds generated from UAV oblique imagery with the adaptive micro-terrain model. The experiment was carried out in a field planted with three cultivars having different canopy shapes and four replicates covering a total area of 48 × 36 m. RGB images in nadir and oblique view were acquired from the maize field at six different time slots during the growing season. Images were processed by Agisoft Metashape to generate 3D point clouds using the structure from motion method and were later processed by MATLAB to obtain clean canopy structure, including height and density. The LAI was estimated by a multivariate linear regression model using crop canopy descriptors derived from the 3D point cloud, which account for height and leaf density distribution along the canopy height. A simulation analysis based on the Sine function effectively demonstrated the micro-terrain model from point clouds. For the ground truth data, a randomized block design with 24 sample areas was used to manually measure LAI, height, N-pen data, and yield during the growing season. It was found that canopy height data from the 3D point clouds has a relatively strong correlation (R2 = 0.89, 0.86, 0.78) with the manual measurement for three cultivars with CH90 . The proposed methodology allows a cost-effective high-resolution mapping of in-field LAI index extraction through UAV 3D data to be used as an alternative to the conventional LAI assessments even in inaccessible regions.
- ItemRegression kriging for improving crop height models fusing ultra-sonic sensing with UAV imagery(Basel : MDPI, 2017) Schirrmann, Michael; Hamdorf, André; Giebel, Antje; Gleiniger, Franziska; Pflanz, Michael; Dammer, Karl-HeinzA crop height model (CHM) can be an important element of the decision making process in agriculture, because it relates well with many agronomic parameters, e.g., crop height, plant biomass or crop yield. Today, CHMs can be inexpensively obtained from overlapping imagery captured from unmanned aerial vehicle (UAV) platforms or from proximal sensors attached to ground-based vehicles used for regular management. Both approaches have their limitations and combining them with a data fusion may overcome some of these limitations. Therefore, the objective of this study was to investigate if regression kriging, as a geostatistical data fusion approach, can be used to improve the interpolation of ground-based ultrasonic measurements with UAV imagery as covariate. Regression kriging might be suitable because we have a sparse data set (ultrasound) and an exhaustive data set (UAV) and both data sets have favorable properties for geostatistical analysis. To confirm this, we conducted four missions in two different fields in total, where we collected UAV imagery and ultrasonic data alongside. From the overlapping UAV images, surface models and ortho-images were generated with photogrammetric processing. The maps generated by regression kriging were of much higher detail than the smooth maps generated by ordinary kriging, because regression kriging ensures that for each prediction point information from the UAV, imagery is given. The relationship with crop height, fresh biomass and, to a lesser extent, with crop yield, was stronger using CHMs generated by regression kriging than by ordinary kriging. The use of UAV data from the prior mission was also of benefit and could improve map accuracy and quality. Thus, regression kriging is a flexible approach for the integration of UAV imagery with ground-based sensor data, with benefits for precision agriculture-oriented farmers and agricultural service providers.