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- ItemBiomaterial based strategies to reconstruct the nigrostriatal pathway in organotypic slice co-cultures(Amsterdam [u.a.] : Elsevier, 2021) Ucar, Buket; Kajtez, Janko; Foidl, Bettina M.; Eigel, Dimitri; Werner, Carsten; Long, Katherine R.; Emnéus, Jenny; Bizeau, Joëlle; Lomora, Mihai; Pandit, Abhay; Newland, Ben; Humpel, ChristianProtection or repair of the nigrostriatal pathway represents a principal disease-modifying therapeutic strategy for Parkinson's disease (PD). Glial cell line-derived neurotrophic factor (GDNF) holds great therapeutic potential for PD, but its efficacious delivery remains difficult. The aim of this study was to evaluate the potential of different biomaterials (hydrogels, microspheres, cryogels and microcontact printed surfaces) for reconstructing the nigrostriatal pathway in organotypic co-culture of ventral mesencephalon and dorsal striatum. The biomaterials (either alone or loaded with GDNF) were locally applied onto the brain co-slices and fiber growth between the co-slices was evaluated after three weeks in culture based on staining for tyrosine hydroxylase (TH). Collagen hydrogels loaded with GDNF slightly promoted the TH+ nerve fiber growth towards the dorsal striatum, while GDNF loaded microspheres embedded within the hydrogels did not provide an improvement. Cryogels alone or loaded with GDNF also enhanced TH+ fiber growth. Lines of GDNF immobilized onto the membrane inserts via microcontact printing also significantly improved TH+ fiber growth. In conclusion, this study shows that various biomaterials and tissue engineering techniques can be employed to regenerate the nigrostriatal pathway in organotypic brain slices. This comparison of techniques highlights the relative merits of different technologies that researchers can use/develop for neuronal regeneration strategies. © 2020
- ItemAmmonia and greenhouse gas emissions from slurry storage : A review(Amsterdam [u.a.] : Elsevier, 2020) Kupper, Thomas; Häni, Christoph; Neftel, Albrecht; Kincaid, Chris; Bühler, Marcel; Amon, Barbara; VanderZaag, AndrewStorage of slurry is an important emission source for ammonia (NH3), nitrous oxide (N2O), methane (CH4), carbon dioxide (CO2) and hydrogen sulfide (H2S) from livestock production. Therefore, this study collected published emission data from stored cattle and pig slurry to determine baseline emission values and emission changes due to slurry treatment and coverage of stores. Emission data were collected from 120 papers yielding 711 records of measurements conducted at farm-, pilot- and laboratory-scale. The emission data reported in a multitude of units were standardized and compiled in a database. Descriptive statistics of the data from untreated slurry stored uncovered revealed a large variability in emissions for all gases. To determine baseline emissions, average values based on a weighting of the emission data according to the season and the duration of the emission measurements were constructed using the data from farm-scale and pilot-scale studies. Baseline emissions for cattle and pig slurry stored uncovered were calculated. When possible, it was further distinguished between storage in tanks without slurry treatment and storage in lagoons which implies solid-liquid separation and biological treatment. The baseline emissions on an area or volume basis are: for NH3: 0.12 g m−2 h-1 and 0.15 g m−2 h-1 for cattle and pig slurry stored in lagoons, and 0.08 g m−2 h-1 and 0.24 g m−2 h-1 for cattle and pig slurry stored in tanks; for N2O: 0.0003 g m−2 h-1 for cattle slurry stored in lagoons, and 0.002 g m−2 h-1 for both slurry types stored in tanks; for CH4: 0.95 g m-3 h-1 and 3.5 g m-3 h-1 for cattle and pig slurry stored in lagoons, and 0.58 g m-3 h-1 and 0.68 g m-3 h-1 for cattle and pig slurry stored in tanks; for CO2: 6.6 g m−2 h-1 and 0.3 g m−2 h-1 for cattle and pig slurry stored in lagoons, and 8.0 g m−2 h-1 for both slurry types stored in tanks; for H2S: 0.04 g m−2 h-1 and 0.01 g m−2 h-1 for cattle and pig slurry stored in lagoons. Related to total ammoniacal nitrogen (TAN), baseline emissions for tanks are 16% and 15% of TAN for cattle and pig slurry, respectively. Emissions of N2O and CH4 relative to nitrogen (N) and volatile solids (VS) are 0.13% of N and 0.10% of N and 2.9% of VS and 4.7% of VS for cattle and pig slurry, respectively. Total greenhouse gas emissions from slurry stores are dominated by CH4. The records on slurry treatment using acidification show a reduction of NH3 and CH4 emissions during storage while an increase occurs for N2O and a minor change for CO2 as compared to untreated slurry. Solid-liquid separation causes higher losses for NH3 and a reduction in CH4, N2O and CO2 emissions. Anaerobically digested slurry shows higher emissions during storage for NH3 while losses tend to be lower for CH4 and little changes occur for N2O and CO2 compared to untreated slurry. All cover types are found to be efficient for emission mitigation of NH3 from stores. The N2O emissions increase in many cases due to coverage. Lower CH4 emissions occur for impermeable covers as compared to uncovered slurry storage while for permeable covers the effect is unclear or emissions tend to increase. Limited and inconsistent data regarding emission changes with covering stores are available for CO2 and H2S. The compiled data provide a basis for improving emission inventories and highlight the need for further research to reduce uncertainty and fill data gaps regarding emissions from slurry storage.
- ItemTowards hybrid one-pot/one-electrode Pd-NPs-based nanoreactors for modular biocatalysis(Amsterdam [u.a.] : Elsevier, 2021) Koch, M.; Apushkinskaya, N.; Zolotukhina, E.V.; Silina, Y.E.Here, fundamental aspects affecting template-assisted engineering of oxidase-associated peroxide oxidation co-catalysis of the modeled microanalytical system based on the hybrid palladium nanoparticles (Pd-NPs) with tailored functional properties were studied. By an accurate tuning and validation of the experimental setup, a modular Pd-NPs-doped one-pot/one-electrode amperometric nanobiosensor for advanced multiplex analyte detection was constructed. The specific operational conditions (electrochemical read-out mode, pH, regeneration procedure) of the modular one-pot/one-electrode nanobiosensor allowed a reliable sensing of L-lactate (with linear dynamic range, LDR = 500 µM – 2 mM, R2 = 0.977), D-glucose (with LDR = 200 µM – 50 mM, R2 = 0.987), hydrogen peroxide (with LDR = 20 µM – 100 mM, R2 = 0.998) and glutaraldehyde (with LDR = 1 – 100 mM, R2 = 0.971). In addition, mechanistic aspects influencing the performance of Pd-NPs-doped one-pot/one-electrode for multiplex analyte sensing were studied in detail. The designed one-pot/one-electrode amperometric nanobiosensor showed a thin layer electrochemical behavior that greatly enhanced electron transfer between the functional hybrid layer and the electrode. Finally, a specific regeneration procedure of the hybrid one-pot/one-electrode and algorithm towards its usage for modular biocatalysis were developed. The reported strategy can readily be considered as a guideline towards the fabrication of commercialized nanobiosensors with tailored properties for advanced modular biocatalysis.
- ItemPerformance of seasonal forecasts for the flowering and veraison of two major Portuguese grapevine varieties(Amsterdam [u.a.] : Elsevier, 2023) Yang, Chenyao; Ceglar, Andrej; Menz, Christoph; Martins, Joana; Fraga, Helder; Santos, João A.Seasonal phenology forecasts are becoming increasingly demanded by winegrowers and viticulturists. Forecast performance needs to be investigated over space and time before practical applications. We assess seasonal forecast performance (skill, probability and accuracy) in predicting flowering and veraison stages of two representative varieties in Portugal over 1993–2017. The state-of-the-art forecast system ECMWF-SEAS5 provides 7-month seasonal forecasts and is coupled with a locally adapted phenology model. Overall, findings illustrate the dependence of forecast performance on initialization timings, regions and predicting subjects (stages and varieties). Forecast performance improves by delaying the initialization timing and only forecasts initialized on April 1st show better skills than climatology on predicting phenology terciles (early/normal/late). The considerable bias of daily values of seasonal climate predictions can represent the main barrier to accurate forecasts. Better prediction performance is consistently found in Central-Southern regions compared to Northern regions, attributing to an earlier phenology occurrence with a shorter forecast length. Comparable predictive skills between flowering and veraison for both varieties imply better predictability in summer. Consequently, promising seasonal phenology predictions are foreseen in Central-Southern wine regions using forecasts initialized on April 1st with approximately 1–2/3–4 months lead time for flowering/veraison: potential prediction errors are ∼2 weeks, along with an overall moderate forecast skill on categorical events. However, considerable inter-annual variability of forecast performance over the same classified phenology years reflects the substantial influence of climate variability. This may represent the main challenge for reliable forecasts in Mediterranean regions. Recommendations are suggested for methodological innovations and practical applications towards reliable regional phenology forecasts.
- ItemA review of coarse mineral dust in the Earth system(Amsterdam [u.a.] : Elsevier, 2022) Adebiyi, Adeyemi; Kok, Jasper F.; Murray, Benjamin J.; Ryder, Claire L.; Stuut, Jan-Berend W.; Kahn, Ralph A.; Knippertz, Peter; Formenti, Paola; Mahowald, Natalie M.; Pérez García-Pando, Carlos; Klose, Martina; Ansmann, Albert; Samset, Bjørn H.; Ito, Akinori; Balkanski, Yves; Di Biagio, Claudia; Romanias, Manolis N.; Huang, Yue; Meng, JunMineral dust particles suspended in the atmosphere span more than three orders of magnitude in diameter, from <0.1 µm to more than 100 µm. This wide size range makes dust a unique aerosol species with the ability to interact with many aspects of the Earth system, including radiation, clouds, hydrology, atmospheric chemistry, and biogeochemistry. This review focuses on coarse and super-coarse dust aerosols, which we respectively define as dust particles with a diameter of 2.5–10 µm and 10–62.5 µm. We review several lines of observational evidence indicating that coarse and super-coarse dust particles are transported farther than previously expected and that the abundance of these particles is substantially underestimated in current global models. We synthesize previous studies that used observations, theories, and model simulations to highlight the impacts of coarse and super-coarse dust aerosols on the Earth system, including their effects on dust-radiation interactions, dust-cloud interactions, atmospheric chemistry, and biogeochemistry. Specifically, coarse and super-coarse dust aerosols produce a net positive direct radiative effect (warming) at the top of the atmosphere and can modify temperature and water vapor profiles, influencing the distribution of clouds and precipitation. In addition, coarse and super-coarse dust aerosols contribute a substantial fraction of ice-nucleating particles, especially at temperatures above –23 °C. They also contribute a substantial fraction to the available reactive surfaces for atmospheric processing and the dust deposition flux that impacts land and ocean biogeochemistry by supplying important nutrients such as iron and phosphorus. Furthermore, we examine several limitations in the representation of coarse and super-coarse dust aerosols in current model simulations and remote-sensing retrievals. Because these limitations substantially contribute to the uncertainties in simulating the abundance and impacts of coarse and super-coarse dust aerosols, we offer some recommendations to facilitate future studies. Overall, we conclude that an accurate representation of coarse and super-coarse properties is critical in understanding the impacts of dust aerosols on the Earth system.
- ItemRhodium-catalyzed borylative carbon monoxide reduction to gem-diborylmethane(Amsterdam [u.a.] : Elsevier, 2021) Xua, Jian-Xing; Wu, Fu-Peng; Wu, Xiao-FengHerein, we developed a rhodium-catalyzed reduction of CO with bis(pinacolato)diboron (B2pin2) under atmospheric pressure of CO with silane as the hydride source, gem-diborylmethane [H2C(Bpin)2] as a versatile and fundamental C1 compound can be formed. Notably, this is the first example on transition metal-catalyzed borylation of CO. © 2020 The Author(s)
- ItemOSL-dating of the Pleistocene-Holocene climatic transition in loess from China, Europe and North America, and evidence for accretionary pedogenesis(Amsterdam [u.a.] : Elsevier, 2021) Constantin, D.; Mason, J.A.; Veres, D.; Hambach, U.; Panaiotu, C.; Zeeden, C.; Zhou, L.; Marković, S.B.; Gerasimenko, N.; Avram, A.; Tecsa, V.; Groza-Sacaciu, S.M.; del Valle Villalonga, L.; Begy, R.; Timar-Gabor, A.Loess deposits intercalated by paleosols are detailed terrestrial archives of Quaternary climate variability providing information on the global dust cycle and landscape dynamics. Their paleoclimatic significance is often explored by quantifying their mineral magnetic properties due to their sensitivity to local/regional hydroclimate variability. Detailed chronological assessment of such regional proxy records around the climatic transitions allow a better understanding of how regional records react to major global climatic transitions such as the Pleistocene-Holocene climatic transition. Logs of high-resolution magnetic susceptibility and its frequency dependence were used as paleoclimatic proxies to define the environmental transition from the last glacial loess to the current interglacial soil as reflected in nine loess-paleosol sequences across the northern hemisphere, from the Chinese Loess Plateau, the southeastern European loess belt and the central Great Plains, USA. The onset of increase in magnetic susceptibility above typical loess values was used to assess the onset of, and developments during, the Pleistocene-Holocene climatic transition. High-resolution luminescence dating was applied on multiple grain-sizes (4–11 μm, 63–90 μm, 90–125 μm) of quartz extracts from the same sample in order to investigate the timing of Pleistocene-Holocene climatic transition in the investigated sites. The magnetic susceptibility signal shows a smooth and gradual increase for the majority of the sites from the typical low loess values to the interglacial ones. The initiation of this increase, interpreted as recording the initiation of the Pleistocene-Holocene climatic transition at each site, was dated to 14–17.5 ka or even earlier. Our chronological results highlight the need of combining paleoclimatic proxies (magnetic susceptibility) with absolute dating when investigating the Pleistocene-Holocene climatic transition as reflected by the evolution of this proxy in order to avoid chronostratigraphic misinterpretations in loess-paleosol records caused by simple pattern correlation. The detailed luminescence chronologies evidence the continuity of eolian mineral dust accumulation regardless of glacial or interglacial global climatic regimes. Coupled with magnetic susceptibility records this indicates that dust sedimentation and pedogenesis act simultaneously and result in a non-negligible accretional component in the formation of Holocene soils in loess regions across the Northern Hemisphere. The luminescence ages allowed the modeling of accumulation rates for the Holocene soil which are similar for European, Chinese and U.S.A. loess sites investigated and vary from 2 cm ka−1 to 9 cm ka−1. While accretional pedogenesis has often been implicitly or explicitly assumed in paleoclimatic interpretation of loess-paleosol sequences, especially in the Chinese Loess Plateau, our luminescence data add direct evidence for ongoing sedimentation as interglacial soils formed.
- ItemLoess landscapes of Europe – Mapping, geomorphology, and zonal differentiation(Amsterdam [u.a.] : Elsevier, 2021) Lehmkuhl, F.; Nett, J.J.; Pötter, S.; Schulte, P.; Sprafke, T.; Jary, Z.; Antoine, P.; Wacha, L.; Wolf, D.; Zerboni, A.; Hošek, J.; Marković, S.B.; Obreht, I.; Sümegi, P.; Veres, D.; Zeeden, C.; Boemke, B.; Schaubert, V.; Viehweger, J.; Hambach, U.Paleoenvironmental reconstructions on a (supra-)regional scale have gained attention in Quaternary sciences during the last decades. In terrestrial realms, loess deposits and especially intercalations of loess and buried soils, so called loess-paleosol sequences (LPS) are important archives to unravel the terrestrial response to e.g. climatic fluctuations and reconstruct paleoenvironments during the Pleistocene. The analysis of LPS requires the knowledge of several key factors, such as the distribution of the aeolian sediments, their location relative to (potential) source areas, the climate conditions that led to their emplacement and the topography of the sink area. These factors strongly influence the sedimentological and paleoenvironmental characteristics of LPS and show broad variations throughout Europe, leading to a distinct distribution pattern throughout the continent. We present a new map of the distribution of aeolian sediments (mainly loess) and major potential source areas for Europe. The map was compiled combining geodata of different mapping approaches. Most of the used geodata stems from accurate national maps of 27 different countries. Problematic aspects such as different nomenclatures across administrative borders were carefully investigated and revised. The result is a seamless map, which comprises pedological, geological, and geomorphological data and can be used for paleoenvironmental and archeological studies and other applications. We use the resulting map and data from key geomorphological cross-sections to discuss the various influences of geomorphology and paleoenvironment on the deposition and preservation of Late Pleistocene loess throughout Europe. We divided the loess areas into 6 main loess domains and 17 subdomains to understand and explain the factors controlling their distribution and characteristics. For the subdivision we used the following criteria: (1) influence of silt production areas, (2) affiliation to subcatchments, as rivers are very important regional silt transport agents, (3) occurrence of past periglacial activity with characteristic overprinting of the deposits. Additionally, the sediment distribution is combined with elevation data, to investigate the loess distribution statistically as well as visually. Throughout Europe, the variations, and differences of the loess domains are the results of a complex interplay of changing paleoenvironmental conditions and related geomorphologic processes, controlling dust sources, transport, accumulation, preservation, pedogenesis, alongside erosional and reworking events. Climatic, paleoclimatic, and pedoclimatic gradients are on the continental scale an additional important factor, since there are e.g. latitudinal differences of permafrost and periglacial processes, an increase in continentality from west to east and in aridity from northwest to southeast and south, strongly affecting regional sedimentary and geomorphic dynamics. We propose three main depositional regimes for loess formation in Europe: (1.) periglacial and tundra loess formation with periglacial processes and permafrost in the high latitude and mountainous regions; (2.) steppe and desert margin loess formation in the (semi-)arid regions; and (3.) loess and soil formation in temperate and subtropical regions. Loess deposits of (1.) and (2.) show coarser, sandier particle distributions towards the glacial and desert regions. In the humid areas (3.) forest vegetation limited dust production and accumulation, therefore, there is an increase in finer grain sizes due to an increase in weathering.
- ItemCurvature model for nanoparticle size effects on peptide fibril stability and molecular dynamics simulation data(Amsterdam [u.a.] : Elsevier, 2022) John, Torsten; Martin, Lisandra L.; Risselada, Herre Jelger; Abel, BerndNanostructured surfaces are widespread in nature and are being further developed in materials science. This makes them highly relevant for biomolecules, such as peptides. In this data article, we present a curvature model and molecular dynamics (MD) simulation data on the influence of nanoparticle size on the stability of amyloid peptide fibrils related to our research article entitled “Mechanistic insights into the size-dependent effects of nanoparticles on inhibiting and accelerating amyloid fibril formation” (John et al., 2022) [1]. We provide the code to perform MD simulations in GROMACS 4.5.7 software of arbitrarily chosen biomolecule oligomers adsorbed on a curved surface of chosen nanoparticle size. We also provide the simulation parameters and data for peptide oligomers of Aß40, NNFGAIL, GNNQQNY, and VQIYVK. The data provided allows researchers to further analyze our MD simulations and the curvature model allows for a better understanding of oligomeric structures on surfaces.
- ItemGrain-size distribution dataset of supercritical flow sediments from a Gilbert-type delta that are associated with disaggregation bands(Amsterdam [u.a.] : Elsevier, 2022) Tanner, David C.; Brandes, Christian; Winsemann, JuttaThis is a dataset of grain-size distribution in sub- and supercritical flow sediments of a Gilbert-type delta from an outcrop in North Germany. Thirteen samples of ca 2.5 kg were dried (at 105°C), and homogenised twice with a sample divider. A representative sample of 1-2 g was then analysed using laser diffraction. The grain-size distribution of the sand has a maximum between fine to medium sand, with a long fine fraction tail down to 0.06 µm and occasional coarse fractions (up to 1.5 mm) in some samples. Specific grain-size distributions correlate with the different sedimentary bedforms from which the samples were taken. This data is important for two reasons: Firstly, sedimentary structures formed by Froude supercritical flows are controlled by grain-size. However, few studies have provided grain-size datasets from the natural record, which often have a much wider grain-size distribution than experimentally-produced supercritical flow deposits. Secondly, the sands were deformed subsequently by disaggregation bands, a type of geological fault that only develops in porous granular materials, i.e. well-sorted, medium sand. The disaggregation bands are indicative of seismic or even aseismic, creeping movement of basement faults.