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Simultaneous Calibration of Grapevine Phenology and Yield with a Soil–Plant–Atmosphere System Model Using the Frequentist Method

2021-8-20, Yang, Chenyao, Menz, Christoph, Fraga, Helder, Reis, Samuel, Machado, Nelson, Malheiro, Aureliano C., Santos, João A.

Reliable estimations of parameter values and associated uncertainties are crucial for crop model applications in agro-environmental research. However, estimating many parameters simultaneously for different types of response variables is difficult. This becomes more complicated for grapevines with different phenotypes between varieties and training systems. Our study aims to evaluate how a standard least square approach can be used to calibrate a complex grapevine model for simulating both the phenology (flowering and harvest date) and yield of four different variety–training systems in the Douro Demarcated Region, northern Portugal. An objective function is defined to search for the best-fit parameters that result in the minimum value of the unweighted sum of the normalized Root Mean Squared Error (nRMSE) of the studied variables. Parameter uncertainties are estimated as how a given parameter value can determine the total prediction variability caused by variations in the other parameter combinations. The results indicate that the best-estimated parameters show a satisfactory predictive performance, with a mean bias of −2 to 4 days for phenology and −232 to 159 kg/ha for yield. The corresponding variance in the observed data was generally well reproduced, except for one occasion. These parameters are a good trade-off to achieve results close to the best possible fit of each response variable. No parameter combinations can achieve minimum errors simultaneously for phenology and yield, where the best fit to one variable can lead to a poor fit to another. The proposed parameter uncertainty analysis is particularly useful to select the best-fit parameter values when several choices with equal performance occur. A global sensitivity analysis is applied where the fruit-setting parameters are identified as key determinants for yield simulations. Overall, the approach (including uncertainty analysis) is relatively simple and straightforward without specific pre-conditions (e.g., model continuity), which can be easily applied for other models and crops. However, a challenge has been identified, which is associated with the appropriate assumption of the model errors, where a combination of various calibration approaches might be essential to have a more robust parameter estimation.

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Successful optimization of reconstruction parameters in structured illumination microscopy

2019, Karras, Christian, Smedh, Maria, Förster, Ronny, Deschout, Hendrik, Fernandez-Rodriguez, Julia, Heintzmann, Rainer

The impact of the different reconstruction parameters in super-resolution structured illumination microscopy (SIM) on image artifacts is carefully analyzed. These parameters comprise the Wiener filter parameter, an apodization function, zero-frequency suppression and modifications of the optical transfer function. A detailed investigation of the reconstructed image spectrum is concluded to be suitable for identifying artifacts. For this purpose, two samples, an artificial test slide and a more realistic biological system, were used to characterize the artifact classes and their correlation with the image spectra as well as the reconstruction parameters. In addition, a guideline for efficient parameter optimization is suggested and the implementation of the parameters in selected up-to-date processing packages (proprietary and open-source) is depicted. © 2018 The Authors

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Analysis of electronic properties frommagnetotransport measurements on Ba(Fe1-xNix)2As2 thin films

2020, Shipulin, I., Richter, S., Thomas, A.A., Nielsch, K., Hühne, R., Martovitsky, V.

We performed a detailed structural, magnetotransport, and superconducting analysis of thin epitaxial Ba(Fe1-xNix)2As2 films with Ni doping of x = 0.05 and 0.08, as prepared by pulsed laser deposition. X-ray diffraction studies demonstrate the high crystalline perfection of the films, which have a similar quality to single crystals. Furthermore, magnetotransport measurements of the films were performed in magnetic fields up to 9 T. The results we used to estimate the density of electronic states at the Fermi level, the coefficient of electronic heat capacity, and other electronic parameters for this compound, in their dependence on the dopant concentration within the framework of the Ginzburg-Landau-Abrikosov-Gorkov theory. The comparison of the determined parameters with measurement data on comparable Ba(Fe1-xNix)2As2 single crystals shows good agreement, which confirms the high quality of the obtained films.

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Finite-difference modelling to evaluate seismic P-wave and shear-wave field data

2015, Burschil, T., Beilecke, T., Krawczyk, C.M.

High-resolution reflection seismic methods are an established non-destructive tool for engineering tasks. In the near surface, shear-wave reflection seismic measurements usually offer a higher spatial resolution in the same effective signal frequency spectrum than P-wave data, but data quality varies more strongly. To discuss the causes of these differences, we investigated a P-wave and a SH-wave seismic reflection profile measured at the same location on the island of Föhr, Germany and applied seismic reflection processing to the field data as well as finite-difference modelling of the seismic wave field. The simulations calculated were adapted to the acquisition field geometry, comprising 2 m receiver distance (1 m for SH wave) and 4 m shot distance along the 1.5 km long P-wave and 800 m long SH-wave profiles. A Ricker wavelet and the use of absorbing frames were first-order model parameters. The petrophysical parameters to populate the structural models down to 400 m depth were taken from borehole data, VSP (vertical seismic profile) measurements and cross-plot relations. The simulation of the P-wave wave-field was based on interpretation of the P-wave depth section that included a priori information from boreholes and airborne electromagnetics. Velocities for 14 layers in the model were derived from the analysis of five nearby VSPs (vP =1600–2300 m s-1). Synthetic shot data were compared with the field data and seismic sections were created. Major features like direct wave and reflections are imaged. We reproduce the mayor reflectors in the depth section of the field data, e.g. a prominent till layer and several deep reflectors. The SH-wave model was adapted accordingly but only led to minor correlation with the field data and produced a higher signal-to-noise ratio. Therefore, we suggest to consider for future simulations additional features like intrinsic damping, thin layering, or a near-surface weathering layer. These may lead to a better understanding of key parameters determining the data quality of near-surface shear-wave seismic measurements.

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Paradigm change in hydrogel sensor manufacturing: From recipe-driven to specification-driven process optimization

2016, Windisch, M., Eichhorn, K.-J., Lienig, J., Gerlach, G., Schulze, L.

The volume production of industrial hydrogel sensors lacks a quality-assuring manufacturing technique for thin polymer films with reproducible properties. Overcoming this problem requires a paradigm change from the current recipe-driven manufacturing process to a specification-driven one. This requires techniques to measure quality-determining hydrogel film properties as well as tools and methods for the control and optimization of the manufacturing process. In this paper we present an approach that comprehensively addresses these issues. The influence of process parameters on the hydrogel film properties and the resulting sensor characteristics have been assessed by means of batch manufacturing tests and the application of several measurement techniques. Based on these investigations, we present novel methods and a tool for the optimization of the cross-linking process step, with the latter being crucial for the sensor sensitivity. Our approach is applicable to various sensor designs with different hydrogels. It has been successfully tested with a sensor solution for surface technology based on PVA/PAA hydrogel as sensing layer and a piezoelectric thickness shear resonator as transducer. Finally, unresolved issues regarding the measurement of hydrogel film parameters are outlined for future research.

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Noninvasive Estimation of Water Retention Parameters by Observing the Capillary Fringe with Magnetic Resonance Sounding

2014, Costabel, Stephan, Günther, Thomas

The magnetic resonance sounding (MRS) method is usually applied for delineation and characterization of aquifer system stratification. Its unique property, distinct from other hydrogeophysical methods, is the direct sensitivity to water content in the subsurface. The inversion of MRS data yields the subsurface water content distribution without need of a petrophysical model. Recent developments in instrumentation, i.e., decreased instrumental dead times and advanced noise cancellation strategies, enable the use of this method for investigating the vadose zone. A possible way to interpret MRS measurements with focus on water retention (WR) parameters is an inversion approach that directly provides WR parameters by modeling the capillary fringe (CF inversion). We have developed this kind of inversion further to account for different WR models and present a sensitivity study based on both synthetic and real field data. To assess the general applicability of the CF inversion, we analyzed the resolution properties for different measurement layouts and the parameter uncertainties for different realistic scenarios. Under moderate noise conditions and if the water table position is known, all WR parameters except the residual water content can be reliably estimated. The relative accuracy of the estimated pore distribution index estimation is better for larger CF. Small measurement loops of 5-m diameter achieve the best resolution for shallow investigation depths of <10 m.