Search Results
Computational modelling and simulation of cancer growth and migration within a 3D heterogeneous tissue: The effects of fibre and vascular structure
The term cancer covers a multitude of bodily diseases, broadly categorised by having cells which do not behave normally. Since cancer cells can arise from any type of cell in the body, cancers can grow in or around any tissue or organ making the disease highly complex. Our research is focused on understanding the specific mechanisms that occur in the tumour microenvironment via mathematical and computational modeling. We present a 3D individual-based model which allows one to simulate the behaviour of, and spatio-temporal interactions between, cells, extracellular matrix fibres and blood vessels. Each agent (a single cell, for example) is fully realised within the model and interactions are primarily governed by mechanical forces between elements. However, as well as the mechanical interactions we also consider chemical interactions, for example, by coupling the code to a finite element solver to model the diffusion of oxygen from blood vessels to cells. The current state of the art of the model allows us to simulate tumour growth around an arbitrary blood-vessel network or along the striations of fibrous tissue.
Existence of solutions of a finite element flux-corrected-transport scheme
The existence of a solution is proved for a nonlinear finite element flux-corrected-transport (FEM-FCT) scheme with arbitrary time steps for evolutionary convection-diffusion-reaction equations and transport equations.
Modeling, simulation, and optimization of geothermal energy production from hot sedimentary aquifers
Geothermal district heating development has been gaining momentum in Europe with numerous deep geothermal installations and projects currently under development. With the increasing density of geothermal wells, questions related to the optimal and sustainable reservoir exploitation become more and more important. A quantitative understanding of the complex thermo-hydraulic interaction between tightly deployed geothermal wells in heterogeneous temperature and permeability fields is key for a maximum sustainable use of geothermal resources. Motivated by the geological settings of the Upper Jurassic aquifer in the Greater Munich region, we develop a computational model based on finite element analysis and gradient-free optimization to simulate groundwater flow and heat transport in hot sedimentary aquifers, and investigate numerically the optimal positioning and spacing of multi-well systems. Based on our numerical simulations, net energy production from deep geothermal reservoirs in sedimentary basins by smart geothermal multi-well arrangements provides significant amounts of energy to meet heat demand in highly urbanized regions. Our results show that taking into account heterogeneous permeability structures and variable reservoir temperature may drastically affect the results in the optimal configuration. We demonstrate that the proposed numerical framework is able to efficiently handle generic geometrical and geologocal configurations, and can be thus flexibly used in the context of multi-variable optimization problems. Hence, this numerical framework can be used to assess the extractable geothermal energy from heterogeneous deep geothermal reservoirs by the optimized deployment of smart multi-well systems.
Displacement and pressure reconstruction from magnetic resonance elastography images: Application to an in silico brain model
This paper investigates a data assimilation approach for non-invasive quantification of intracranial pressure from partial displacement data, acquired through magnetic resonance elastography. Data assimilation is based on a parametrized-background data weak methodology, in which the state of the physical system tissue displacements and pressure fields is reconstructed from partially available data assuming an underlying poroelastic biomechanics model. For this purpose, a physics-informed manifold is built by sampling the space of parameters describing the tissue model close to their physiological ranges, to simulate the corresponding poroelastic problem, and compute a reduced basis. Displacements and pressure reconstruction is sought in a reduced space after solving a minimization problem that encompasses both the structure of the reduced-order model and the available measurements. The proposed pipeline is validated using synthetic data obtained after simulating the poroelastic mechanics on a physiological brain. The numerical experiments demonstrate that the framework can exhibit accurate joint reconstructions of both displacement and pressure fields. The methodology can be formulated for an arbitrary resolution of available displacement data from pertinent images. It can also inherently handle uncertainty on the physical parameters of the mechanical model by enlarging the physics-informed manifold accordingly. Moreover, the framework can be used to characterize, in silico, biomarkers for pathological conditions, by appropriately training the reduced-order model. A first application for the estimation of ventricular pressure as an indicator of abnormal intracranial pressure is shown in this contribution.
A reduced-order modeling for efficient design study of artificial valve in enlarged ventricular outflow tracts
A computational approach is proposed for efficient design study of a reducer stent to be percutaneously implanted in enlarged right ventricular outflow tracts (RVOT). The need for such a device is driven by the absence of bovine or artificial valves which could be implanted in these RVOT to replace the absent or incompetent native valve, as is often the case over time after Tetralogy of Fallot repair. Hemodynamics are simulated in the stented RVOT via a reduce order model based on proper orthogonal decomposition (POD), while the artificial valve is modeled as a thin resistive surface. The reduced order model is obtained from the numerical solution on a reference device configuration, then varying the geometrical parameters (diameter) for design purposes. To validate the approach, forces exerted on the valve and on the reducer are monitored, varying with geometrical parameters, and compared with the results of full CFD simulations. Such an approach could also be useful for uncertainty quantification. Device design, percutaneous pulmonary valve replacement, proper orthogonal decomposition (POD), finite element method, blood flow CFD, repaired Tetralogy of Fallot.
Optimal and robust a posteriori error estimates in L∞(L2) for the approximation of Allen-Cahn equations past singularities
Optimal a posteriori error estimates in L∞(L2) are derived for the finite element approximation of Allen-Cahn equations. The estimates depend on the inverse of a small parameter only in a low order polynomial and are valid past topological changes of the evolving interface. The error analysis employs an elliptic reconstruction of the approximate solution and applies to a large class of conforming, nonconforming, mixed, and discontinuous Galerkin methods. Numerical experiments illustrate the theoretical results.
Functional a posteriori error estimation for stationary reaction-convection-diffusion problems
A functional type a posteriori error estimator for the finite element discretisation of the stationary reaction-convection-diffusion equation is derived. In case of dominant convection, the solution for this class of problems typically exhibits boundary layers and shock-front like areas with steep gradients. This renders the accurate numerical solution very demanding and appropriate techniques for the adaptive resolution of regions with large approximation errors are crucial. Functional error estimators as derived here contain no mesh-dependent constants and provide guaranteed error bounds for any conforming approximation. To evaluate the error estimator, a minimisation problem is solved which does not require any Galerkin orthogonality or any specific properties of the employed approximation space. Based on a set of numerical examples, we assess the performance of the new estimator. It is observed that it exhibits a good efficiency also with convection-dominated problem settings.
Reliable averaging for the primal variable in the Courant FEM and hierarchical error estimators on red-refined meshes
A hierarchical a posteriori error estimator for the first-order finite element method (FEM) on a red-refined triangular mesh is presented for the 2D Poisson model problem. Reliability and efficiency with some explicit constant is proved for triangulations with inner angles smaller than or equal to π/2 . The error estimator does not rely on any saturation assumption and is valid even in the pre-asymptotic regime on arbitrarily coarse meshes. The evaluation of the estimator is a simple post-processing of the piecewise linear FEM without any extra solve plus a higher-order approximation term. The results also allows the striking observation that arbitrary local averaging of the primal variable leads to a reliable and efficient error estimation. Several numerical experiments illustrate the performance of the proposed a posteriori error estimator for computational benchmarks.
Modelling and simulation of flame cutting for steel plates with solid phases and melting
The goal of this work is to describe in detail a quasi-stationary state model which can be used to deeply understand the distribution of the heat in a steel plate and the changes in the solid phases of the steel and into liquid phase during the flame cutting process. We use a 3D-model similar to previous works from Thiebaud [1] and expand it to consider phases changes, in particular, austenite formation and melting of material. Experimental data is used to validate the model and study its capabilities. Parameters defining the shape of the volumetric heat source and the power density are calibrated to achieve good agreement with temperature measurements. Similarities and differences with other models from literature are discussed.
Optimal control of a buoyancy-driven liquid steel stirring modeled with single-phase Navier--Stokes equations
Gas stirring is an important process used in secondary metallurgy. It allows to homogenize the temperature and the chemical composition of the liquid steel and to remove inclusions which can be detrimental for the end-product quality. In this process, argon gas is injected from two nozzles at the bottom of the vessel and rises by buoyancy through the liquid steel thereby causing stirring, i.e., a mixing of the bath. The gas flow rates and the positions of the nozzles are two important control parameters in practice. A continuous optimization approach is pursued to find optimal values for these control variables. The effect of the gas appears as a volume force in the single-phase incompressible NavierStokes equations. Turbulence is modeled with the Smagorinsky Large Eddy Simulation (LES) model. An objective functional based on the vorticity is used to describe the mixing in the liquid bath. Optimized configurations are compared with a default one whose design is based on a setup from industrial practice.