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    Ontology Design for Pharmaceutical Research Outcomes
    (Cham : Springer, 2020) Say, Zeynep; Fathalla, Said; Vahdati, Sahar; Lehmann, Jens; Auer, Sören; Hall, Mark; Merčun, Tanja; Risse, Thomas; Duchateau, Fabien
    The network of scholarly publishing involves generating and exchanging ideas, certifying research, publishing in order to disseminate findings, and preserving outputs. Despite enormous efforts in providing support for each of those steps in scholarly communication, identifying knowledge fragments is still a big challenge. This is due to the heterogeneous nature of the scholarly data and the current paradigm of distribution by publishing (mostly document-based) over journal articles, numerous repositories, and libraries. Therefore, transforming this paradigm to knowledge-based representation is expected to reform the knowledge sharing in the scholarly world. Although many movements have been initiated in recent years, non-technical scientific communities suffer from transforming document-based publishing to knowledge-based publishing. In this paper, we present a model (PharmSci) for scholarly publishing in the pharmaceutical research domain with the goal of facilitating knowledge discovery through effective ontology-based data integration. PharmSci provides machine-interpretable information to the knowledge discovery process. The principles and guidelines of the ontological engineering have been followed. Reasoning-based techniques are also presented in the design of the ontology to improve the quality of targeted tasks for data integration. The developed ontology is evaluated with a validation process and also a quality verification method.
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    Unveiling Relations in the Industry 4.0 Standards Landscape Based on Knowledge Graph Embeddings
    (Cham : Springer, 2020) Rivas, Ariam; Grangel-González, Irlán; Collarana, Diego; Lehmann, Jens; Vidal, Maria-Esther; Hartmann, Sven; Küng, Josef; Kotsis, Gabriele; Tjoa, A Min; Khalil, Ismail
    Industry 4.0 (I4.0) standards and standardization frameworks have been proposed with the goal of empowering interoperability in smart factories. These standards enable the description and interaction of the main components, systems, and processes inside of a smart factory. Due to the growing number of frameworks and standards, there is an increasing need for approaches that automatically analyze the landscape of I4.0 standards. Standardization frameworks classify standards according to their functions into layers and dimensions. However, similar standards can be classified differently across the frameworks, producing, thus, interoperability conflicts among them. Semantic-based approaches that rely on ontologies and knowledge graphs, have been proposed to represent standards, known relations among them, as well as their classification according to existing frameworks. Albeit informative, the structured modeling of the I4.0 landscape only provides the foundations for detecting interoperability issues. Thus, graph-based analytical methods able to exploit knowledge encoded by these approaches, are required to uncover alignments among standards. We study the relatedness among standards and frameworks based on community analysis to discover knowledge that helps to cope with interoperability conflicts between standards. We use knowledge graph embeddings to automatically create these communities exploiting the meaning of the existing relationships. In particular, we focus on the identification of similar standards, i.e., communities of standards, and analyze their properties to detect unknown relations. We empirically evaluate our approach on a knowledge graph of I4.0 standards using the Trans∗ family of embedding models for knowledge graph entities. Our results are promising and suggest that relations among standards can be detected accurately.
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    Encoding Knowledge Graph Entity Aliases in Attentive Neural Network for Wikidata Entity Linking
    (Berlin ; Heidelberg : Springer, 2020) Mulang’, Isaiah Onando; Singh, Kuldeep; Vyas, Akhilesh; Shekarpour, Saeedeh; Vidal, Maria-Esther; Lehmann, Jens; Auer, Sören; Huang, Zhisheng; Beek, Wouter; Wang, Hua; Zhou, Rui; Zhang, Yanchun
    The collaborative knowledge graphs such as Wikidata excessively rely on the crowd to author the information. Since the crowd is not bound to a standard protocol for assigning entity titles, the knowledge graph is populated by non-standard, noisy, long or even sometimes awkward titles. The issue of long, implicit, and nonstandard entity representations is a challenge in Entity Linking (EL) approaches for gaining high precision and recall. Underlying KG in general is the source of target entities for EL approaches, however, it often contains other relevant information, such as aliases of entities (e.g., Obama and Barack Hussein Obama are aliases for the entity Barack Obama). EL models usually ignore such readily available entity attributes. In this paper, we examine the role of knowledge graph context on an attentive neural network approach for entity linking on Wikidata. Our approach contributes by exploiting the sufficient context from a KG as a source of background knowledge, which is then fed into the neural network. This approach demonstrates merit to address challenges associated with entity titles (multi-word, long, implicit, case-sensitive). Our experimental study shows ≈8% improvements over the baseline approach, and significantly outperform an end to end approach for Wikidata entity linking.