Please use this identifier to cite or link to this item: https://oa.tib.eu/renate/handle/123456789/7868
Title: Integrating data and analysis technologies within leading environmental research infrastructures: Challenges and approaches
Authors: Huber, RobertD'Onofrio, ClaudioDevaraju, AnusuriyaKlump, JensLoescher, Henry W.Kindermann, StephanGuru, SiddeswaraGrant, MarkMorris, BerylWyborn, LesleyEvans, BenGoldfarb, DoronGenazzio, Melissa A.Ren, XiaoliMagagna, BarbaraThiemann, HannesStocker, Markus
Publishers version: https://doi.org/10.1016/j.ecoinf.2021.101245
URI: https://oa.tib.eu/renate/handle/123456789/7868
https://doi.org/10.34657/6909
Issue Date: 2021
Published in: Ecological informatics : an international journal on ecoinformatics and computational ecology 61 (2021)
Publisher: Amsterdam [u.a.] : Elsevier
Abstract: When researchers analyze data, it typically requires significant effort in data preparation to make the data analysis ready. This often involves cleaning, pre-processing, harmonizing, or integrating data from one or multiple sources and placing them into a computational environment in a form suitable for analysis. Research infrastructures and their data repositories host data and make them available to researchers, but rarely offer a computational environment for data analysis. Published data are often persistently identified, but such identifiers resolve onto landing pages that must be (manually) navigated to identify how data are accessed. This navigation is typically challenging or impossible for machines. This paper surveys existing approaches for improving environmental data access to facilitate more rapid data analyses in computational environments, and thus contribute to a more seamless integration of data and analysis. By analysing current state-of-the-art approaches and solutions being implemented by world‑leading environmental research infrastructures, we highlight the existing practices to interface data repositories with computational environments and the challenges moving forward. We found that while the level of standardization has improved during recent years, it still is challenging for machines to discover and access data based on persistent identifiers. This is problematic in regard to the emerging requirements for FAIR (Findable, Accessible, Interoperable, and Reusable) data, in general, and problematic for seamless integration of data and analysis, in particular. There are a number of promising approaches that would improve the state-of-the-art. A key approach presented here involves software libraries that streamline reading data and metadata into computational environments. We describe this approach in detail for two research infrastructures. We argue that the development and maintenance of specialized libraries for each RI and a range of programming languages used in data analysis does not scale well. Based on this observation, we propose a set of established standards and web practices that, if implemented by environmental research infrastructures, will enable the development of RI and programming language independent software libraries with much reduced effort required for library implementation and maintenance as well as considerably lower learning requirements on users. To catalyse such advancement, we propose a roadmap and key action points for technology harmonization among RIs that we argue will build the foundation for efficient and effective integration of data and analysis.
Keywords: Data analysis environments; Data service providers; Research infrastructures; Scientific data analysis
Type: article; Text
Publishing status: publishedVersion
DDC: 610
333.7
License: CC BY 4.0 Unported
Link to license: https://creativecommons.org/licenses/by/4.0/
Appears in Collections:Medizin

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Huber, Robert, Claudio D’Onofrio, Anusuriya Devaraju, Jens Klump, Henry W. Loescher, Stephan Kindermann, Siddeswara Guru, Mark Grant, Beryl Morris, Lesley Wyborn, Ben Evans, Doron Goldfarb, Melissa A. Genazzio, Xiaoli Ren, Barbara Magagna, Hannes Thiemann and Markus Stocker, 2021. Integrating data and analysis technologies within leading environmental research infrastructures: Challenges and approaches. 2021. Amsterdam [u.a.] : Elsevier
Huber, R., D’Onofrio, C., Devaraju, A., Klump, J., Loescher, H. W., Kindermann, S., Guru, S., Grant, M., Morris, B., Wyborn, L., Evans, B., Goldfarb, D., Genazzio, M. A., Ren, X., Magagna, B., Thiemann, H. and Stocker, M. (2021) “Integrating data and analysis technologies within leading environmental research infrastructures: Challenges and approaches.” Amsterdam [u.a.] : Elsevier. doi: https://doi.org/10.1016/j.ecoinf.2021.101245.
Huber R, D’Onofrio C, Devaraju A, Klump J, Loescher H W, Kindermann S, Guru S, Grant M, Morris B, Wyborn L, Evans B, Goldfarb D, Genazzio M A, Ren X, Magagna B, Thiemann H, Stocker M. Integrating data and analysis technologies within leading environmental research infrastructures: Challenges and approaches. Vol. 61. Amsterdam [u.a.] : Elsevier; 2021.
Huber, R., D’Onofrio, C., Devaraju, A., Klump, J., Loescher, H. W., Kindermann, S., Guru, S., Grant, M., Morris, B., Wyborn, L., Evans, B., Goldfarb, D., Genazzio, M. A., Ren, X., Magagna, B., Thiemann, H., & Stocker, M. (2021). Integrating data and analysis technologies within leading environmental research infrastructures: Challenges and approaches (Version publishedVersion, Vol. 61). Version publishedVersion, Vol. 61. Amsterdam [u.a.] : Elsevier. https://doi.org/https://doi.org/10.1016/j.ecoinf.2021.101245
Huber R, D’Onofrio C, Devaraju A, Klump J, Loescher H W, Kindermann S, Guru S, Grant M, Morris B, Wyborn L, Evans B, Goldfarb D, Genazzio M A, Ren X, Magagna B, Thiemann H, Stocker M. Integrating data and analysis technologies within leading environmental research infrastructures: Challenges and approaches. 2021;61. doi:https://doi.org/10.1016/j.ecoinf.2021.101245


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